| Name |
WORDMATCHN |
 |
| Status |
The current release has 0
entries and was indexed 21-Sep-2004.
|
| Creation date |
Completed 27th November 1998.
|
| Description |
WORDMATCH application details page
Finds all exact matches of a given size between 2 sequences
Finds all exact matches of a given minimum size between 2 sequences displaying the start points in each sequence and the match length. This program takes two sequences and finds regions where they areidentical. These regions are reported in the output file (andoptionally) in GFF (Gene Feature Format) files. It will not find identical regions smaller than the specified wordsize.
|
| Literature |
None.
|
| WWW |
www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/wordmatch.html
|
| Ftp |
The latest version of the EMBOSS package is available on
ftp://ftp.uk.embnet.org/pub/EMBOSS/
|
| Contact |
This application was written by Ian Longden (il@sanger.ac.uk) InformaticsDivision, The Sanger Centre, Wellcome Trust Genome Campus, Hinxton,Cambridge, CB10 1SA, UK.
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| See also |
|
MATCHERN
| Finds the best local alignments between two sequences
| |
SEQMATCHALLN
| Does an all-against-all comparison of a set of sequences
| |
SUPERMATCHERN
| Finds a match of a large sequence against one or more sequences
| |
WATERN
| Smith-Waterman local alignment.
|
|
|
|
| Data-fields in SRS |
|
| Loaders |
|
| SRS Description |
Structure
(
srsgen.i
,
srsdb.i
,
href.i
)
Syntax
Information
|