Quick SearchSelect Databanks to SearchCreate your QueryUse Analysis ToolsManage your Query ResultsManage your ProjectsCreate Custom ViewsDataBanks Information Page  
Name

WOBBLE

 Search
Status The current release has 0 entries and was indexed 21-Sep-2004.
Creation date Completed Spring 2000.
Description WOBBLE application details page

Wobble base plot

Wobble plots the third position variability as an indicator of a potential coding region.

For each of the six possible translation frames, this plots a graphshowing the percentage of 'G' and 'C' bases in the third position ofcodons in the frame within a window that is moved over the sequence.

Bases other than 'G' and 'C' can be chosen with the -bases option.

The Mean of the third base percentage value is drawn as a horizontalline across the plots.



Literature None.
WWW www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/wobble.html
Ftp The latest version of the EMBOSS package is available on ftp://ftp.uk.embnet.org/pub/EMBOSS/
Contact This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk)
See also
GETORF Finds and extracts open reading frames (ORFs)
MARSCAN Finds MAR/SAR sites in nucleic sequences
PLOTORF Plot potential open reading frames
SHOWORF Pretty output of DNA translations
SIXPACK Display a DNA sequence in both direction with its translation
Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
ID id id 0 0   not indexed
JobName jnm index 0 0   not indexed
Loaders
WOBBLELOAD
EMBOSSDNASIMPLESEQ
EMBOSSPROTSIMPLESEQ
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS Release 7.1.3    Copyright © 1997-2003 LION bioscience AG. All Rights Reserved. Terms of Use Feedback