Name

UNIONP

Status

The current release has 0 entries and was indexed 21-Sep-2004.

Creation date

Written (March 2002) - Peter Rice.

Description

UNION application details page

Reads sequence fragments and builds one sequence

union reads in several sequences, concatenates them and writesthem out as a single sequence.

It is most useful when the input sequences are specified in a List file. The List file (file of sequence names) can be any set of sequences infiles or database entries specified in the normal EMBOSS USA (which caninclude the spcification of sub-regions of the sequence, eg. 'em:hsfau[20,55]'). Specifying several such subregions in a sequence orsequences allows you to enter disjoint sequences to be joined.

Literature

None.

WWW

www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/union.html

Ftp

The latest version of the EMBOSS package is available on ftp://ftp.uk.embnet.org/pub/EMBOSS/

Contact

This application was written by Peter Rice (peter.rice@uk.lionbioscience.com)

See also

BIOSEDP	Replace or delete sequence sections
CUTSEQP	Removes a specified section from a sequence.
DEGAPSEQP	Removes gap characters from sequences
DESCSEQP	Alter the name or description of a sequence.
EXTRACTSEQP	Extract regions from a sequence
MASKSEQP	Mask off regions of a sequence.
PASTESEQP	Insert one sequence into another
REVSEQ	Reverse and complement a sequence
SEQRETP	Reads and writes (returns) sequences
SPLITTERP	Split a sequence into (overlapping) smaller sequences
TRIMEST	Trim poly-A tails off EST sequences
TRIMSEQP	Trim ambiguous bits off the ends of sequences
VECTORSTRIP	Strips out DNA between a pair of vector sequences