| Name |
SHOWORF |
 |
| Status |
The current release has 0
entries and was indexed 19-Sep-2004.
|
| Creation date |
1999 - written.
|
| Description |
SHOWORF application details page
Pretty output of DNA translations
Showorf displays a nucleic acid sequence with its protein translation ina style suitable for publication. The translation can be done in anyframe or combination of frames. It uses codon frequency files to do the translation. You can specifythe codon frequency file that you use with the '-cfile' option. Thedefault table is 'Ehum.cut'.
|
| Literature |
None.
|
| WWW |
www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/showorf.html
|
| Ftp |
The latest version of the EMBOSS package is available on
ftp://ftp.uk.embnet.org/pub/EMBOSS/
|
| Contact |
This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk)
|
| See also |
|
BACKTRANSEQ
| Back translate a protein sequence
| |
GETORF
| Finds and extracts open reading frames (ORFs)
| |
MARSCAN
| Finds MAR/SAR sites in nucleic sequences
| |
PLOTORF
| Plot potential open reading frames
| |
PRETTYSEQ
| Output sequence with translated ranges
| |
REMAP
| Display a sequence with restriction cut sites, translation etc..
| |
SHOWSEQN
| Display a sequence with features, translation etc..
| |
SIXPACK
| Display a DNA sequence in both direction with its translation
| |
TRANSEQ
| Translate nucleic acid sequences
| |
WOBBLE
| Wobble base plot
|
|
|
|
| Data-fields in SRS |
|
| Loaders |
|
| SRS Description |
Structure
(
srsgen.i
,
srsdb.i
,
href.i
)
Syntax
Information
|