Quick SearchSelect Databanks to SearchCreate your QueryUse Analysis ToolsManage your Query ResultsManage your ProjectsCreate Custom ViewsDataBanks Information Page  
Name

REMAP

Search
Status The current release has 0 entries and was indexed 19-Sep-2004.
Creation date Written Spring 2000

Changed 7 Dec 2000 - GWW - to declare isoschizomers that cut

Description REMAP application details page

Display a sequence with restriction cut sites, translation etc

The Restriction Enzyme database (REBASE) is a collection of informationabout restriction enzymes and related proteins. It contains publishedand unpublished references, recognition and cleavage sites,isoschizomers, commercial availability, methylation sensitivity, crystaland sequence data. DNA methyltransferases, homing endonucleases,nicking enzymes, specificity subunits and control proteins are alsoincluded. Most recently, putative DNA methyltransferases andrestriction enzymes, as predicted from analysis of genomic sequences,are also listed.

The home page of REBASE is: http://rebase.neb.com/

This program uses REBASE data to find the recognition sites and/or cutsites of restriction enzymes in a nucleic acid sequence.

This program displays the cut sites on both strands by default.It will optionally also display the translation of the sequence.

There are many options to change the style of display to aid in makingclear presentations.

One potentially very useful option is '-flatreformat' that displays notonly the cut sites which many other restriction cut-site programs willshow, but also shows the recognition site.

Literature None.
WWW www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/remap.html
Ftp The latest version of the EMBOSS package is available on ftp://ftp.uk.embnet.org/pub/EMBOSS/
Contact This application was written by Gary Williams (gwilliam@hgmp.mrc.ac.uk)
See also
BACKTRANSEQ Back translate a protein sequence
PEPNET Displays proteins as a helical net
PEPWHEEL Shows protein sequences as helices
PLOTORF Plot potential open reading frames
PRETTYPLOTP Displays aligned sequences, with colouring and boxing
PRETTYSEQ Output sequence with translated ranges
RECODER Remove restriction sites but maintain the same translation
RESTOVER Finds restriction enzymes that produce a specific overhang
RESTRICT Finds restriction enzyme cleavage sites
SHOWALIGNP Displays a multiple sequence alignment
SHOWORF Pretty output of DNA translations
SHOWSEQP Display a sequence with features, translation etc..
SILENT Silent mutation restriction enzyme scan
SIXPACK Display a DNA sequence in both direction with its translation
TRANSEQ Translate nucleic acid sequences
Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
ID id id 0 0   not indexed
JobName jnm index 0 0   not indexed
Loaders
EMBOSSDNASIMPLESEQ
EMBOSSPROTSIMPLESEQ
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS Release 7.1.3    Copyright © 1997-2003 LION bioscience AG. All Rights Reserved. Terms of Use Feedback