| Name |
PRETTYPLOTN |
 |
| Status |
The current release has 0
entries and was indexed 14-Sep-2004.
|
| Creation date |
Completed 5th May 1999.
|
| Description |
PRETTYPLOT application details page
Displays aligned sequences, with colouring and boxing
prettyplot reads in a set of aligned DNA or protein sequences. It displays them graphically, with conserved regions highlighted invarious ways.
|
| Literature |
None.
|
| WWW |
www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/prettyplot.html
|
| Ftp |
The latest version of the EMBOSS package is available on
ftp://ftp.uk.embnet.org/pub/EMBOSS/
|
| Contact |
This application was written by Ian Longden (il@sanger.ac.uk) InformaticsDivision, The Sanger Centre, Wellcome Trust Genome Campus, Hinxton,Cambridge, CB10 1SA, UK. Many features were first implemented in the EGCG program "prettyplot" byPeter Rice. The original suggestions for the PrettyPlot program were from DenisDuboule and Sigfried Labeit at EMBL. Gert Vriend added the starmarking. Rita Grandori suggested the -NOCOLLISION option.
|
| See also |
|
INFOALIGNN
| Information on a multiple sequence alignment
| |
PEPNET
| Displays proteins as a helical net
| |
PEPWHEEL
| Shows protein sequences as helices
| |
PLOTCONN
| Plots the quality of conservation of a sequence alignment
| |
PRETTYSEQ
| Output sequence with translated ranges
| |
REMAP
| Display a sequence with restriction cut sites, translation etc..
| |
SHOWALIGNN
| Displays a multiple sequence alignment
| |
SHOWSEQN
| Display a sequence with features, translation etc..
| |
SIXPACK
| Display a DNA sequence in both direction with its translation
|
|
|
|
| Data-fields in SRS |
|
| Loaders |
|
| SRS Description |
Structure
(
srsgen.i
,
srsdb.i
,
href.i
)
Syntax
Information
|