| Name |
PEPNET |
 |
| Status |
The current release has 0
entries and was indexed 14-Sep-2004.
|
| Creation date |
Writte (2000) - Alan Bleasby
|
| Description |
PEPNET application details page
Displays proteins as a helical net
This is a method of displaying the residues of a protein in a simple3,4,3,4 repeating pattern that emulates at a simple level thearrangement of residues around an alpha helix. It is therefore easy to see patterns of amphipathicity that you may wishto investigate in more detail by using displays such as pepwheel. You can specify which residues to mark up in squares, diamonds andoctagons.
|
| Literature |
None.
|
| WWW |
www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/pepnet.html
|
| Ftp |
The latest version of the EMBOSS package is available on
ftp://ftp.uk.embnet.org/pub/EMBOSS/
|
| Contact |
This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk)
|
| See also |
|
GARNIER
| Predicts protein secondary structure
| |
HELIXTURNHELIX
| Report nucleic acid binding motifs
| |
HMOMENT
| Hydrophobic moment calculation
| |
PEPCOIL
| Predicts coiled coil regions
| |
PEPWHEEL
| Shows protein sequences as helices
| |
PRETTYPLOTP
| Displays aligned sequences, with colouring and boxing
| |
PRETTYSEQ
| Output sequence with translated ranges
| |
REMAP
| Display a sequence with restriction cut sites, translation etc..
| |
SHOWALIGNP
| Displays a multiple sequence alignment
| |
SHOWSEQP
| Display a sequence with features, translation etc..
| |
SIXPACK
| Display a DNA sequence in both direction with its translation
| |
TMAP
| Displays membrane spanning regions
|
|
|
|
| Data-fields in SRS |
|
| Loaders |
|
| SRS Description |
Structure
(
srsgen.i
,
srsdb.i
,
href.i
)
Syntax
Information
|