| Name |
PEPINFO |
 |
| Status |
The current release has 0
entries and was indexed 14-Sep-2004.
|
| Creation date |
Written (1999) - Mark Faller
|
| Description |
PEPINFO application details page
Plots simple amino acid properties in parallel
pepinfo detects and displays various useful metrics about a proteinsequence. It can plot and display the following properties: - plots of hydrophobicity (using the method of Kyte & Doolittle), ofOHM (Sweet & Eisenberg), or of consensus parameters (Eisenberg et al))
- a histogram of the presence of residues with the physico-chemicalproperties: Tiny, Small, Aliphatic, Aromatic, Non-polar, Polar,Charged, Positive, Negative.
The data are also written out to a data file.
|
| Literature |
- Kyte J, Doolittle RF A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982 May 5;157(1):105-132
- Sweet RM, Eisenberg D Correlation of sequence hydrophobicities measures similarity inthree-dimensional protein structure. J Mol Biol 1983 Dec 25;171(4):479-488
- Eisenberg D, Weiss RM, Terwilliger TC.The helical hydrophobic moment: a measure of the amphiphilicity of ahelix. Nature 1982 Sep 23;299(5881):371-4
|
| WWW |
www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/pepinfo.html
|
| Ftp |
The latest version of the EMBOSS package is available on
ftp://ftp.uk.embnet.org/pub/EMBOSS/
|
| Contact |
This application was written by Mark Faller (mfaller@hgmp.mrc.ac.uk)
|
| See also |
|
BACKTRANSEQ
| Back translate a protein sequence
| |
CHARGE
| Protein charge plot
| |
CHECKTRANS
| Reports STOP codons and ORF statistics of a protein
| |
COMPSEQP
| Counts the composition of dimer/trimer/etc words in a sequence
| |
FREAKP
| Residue/base frequency table or plot
| |
IEP
| Calculates the isoelectric point of a protein
| |
OCTANOL
| Displays protein hydropathy
| |
PEPSTATS
| Protein statistics
| |
PEPWINDOW
| Displays protein hydropathy
| |
PEPWINDOWALL
| Displays protein hydropathy of a set of sequences
|
|
|
|
| Data-fields in SRS |
|
| Loaders |
|
| SRS Description |
Structure
(
srsgen.i
,
srsdb.i
,
href.i
)
Syntax
Information
|