| Description |
PATMATDB application details page
Search a protein sequence with a motif
Takes a protein motif and compares it to a set of protein sequences. It returns the number of matches there were between the motif and eachmatched sequence, length of match, start and end positions of match, andwrites out an alignment.
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| Literature |
- Bairoch, A., Bucher P. (1994) PROSITE: recent developments. Nucleic Acids Research, Vol 22, No.17 3583-3589.
- Bairoch, A., (1992) PROSITE: a dictionary of sites and patterns in proteins. Nucleic Acids Research, Vol 20, Supplement, 2013-2018.
- Peek, J., O'Reilly, T., Loukides, M., (1997) Unix Power Tools, 2nd Edition.
- Gusfield, D., (1997) Algorithms on strings, Trees and Sequences.
- Sedgewick, R,. (1990) Algorithms in C.
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