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Name

GEECEE

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Status The current release has 0 entries and was indexed 10-Sep-2004.
Creation date 
Completed 18th June 1999.Last Modified 18th July 1999.
Description GEECEE application details page

Calculates the fractional GC content of nucleic acid sequences

This calculates the fraction of G+C bases of the input nucleic acidsequence(s).

It reads in nucleic acid sequences, sums the number of 'G' and 'C' basesand writes out the result as the fraction (in the interval 0.0 to 1.0)of the length of the whole sequence.

Literature None.
WWW www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/geecee.html
Ftp The latest version of the EMBOSS package is available on ftp://ftp.uk.embnet.org/pub/EMBOSS/
Contact This application was written by Richard Bruskiewich (rbsk@sanger.ac.uk) InformaticsDivision, The Sanger Centre, Wellcome Trust Genome Campus, Hinxton,Cambridge, CB10 1SA, UK.
See also
CPGPLOT Plot CpG rich areas
CPGREPORT Reports all CpG rich regions
NEWCPGREPORT Report CpG rich areas
NEWCPGSEEK Reports CpG rich regions
Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
ID id id 0 0   not indexed
JobName jnm index 0 0   not indexed
Loaders
EMBOSSDNASIMPLESEQ
EMBOSSPROTSIMPLESEQ
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS Release 7.1.3    Copyright © 1997-2003 LION bioscience AG. All Rights Reserved. Terms of Use Feedback