| Name |
FREAKP |
 |
| Status |
The current release has 0
entries and was indexed 10-Sep-2004.
|
| Creation date |
Wriiten (Aug 2000) Alan Bleasby
|
| Description |
FREAK application details page
Residue/base frequency table or plot
freak takes one or more sequences as input and a set of bases orresidues to search for. It then calculates the frequency of thesebases/residues in a window as it moves along the sequence. Thefrequency is output to a data file or (optionally) plotted. The default set of bases is 'cg' which will calculate the frequency of'G' + 'C' bases within the default moving window of 30 bases.
|
| Literature |
None.
|
| WWW |
www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/freak.html
|
| Ftp |
The latest version of the EMBOSS package is available on
ftp://ftp.uk.embnet.org/pub/EMBOSS/
|
| Contact |
This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk)
|
| See also |
|
BACKTRANSEQ
| Back translate a protein sequence
| |
BTWISTED
| Calculates the twisting in a B-DNA sequence
| |
CHAOS
| Create a chaos game representation plot for a sequence
| |
CHARGE
| Protein charge plot
| |
CHECKTRANS
| Reports STOP codons and ORF statistics of a protein
| |
COMPSEQP
| Counts the composition of dimer/trimer/etc words in a sequence
| |
DAN
| Calculates DNA RNA/DNA melting temperature
| |
IEP
| Calculates the isoelectric point of a protein
| |
ISOCHORE
| Plots isochores in large DNA sequences
| |
OCTANOL
| Displays protein hydropathy
| |
PEPINFO
| Plots simple amino acid properties in parallel
| |
PEPSTATS
| Protein statistics
| |
PEPWINDOW
| Displays protein hydropathy
| |
PEPWINDOWALL
| Displays protein hydropathy of a set of sequences
| |
WORDCOUNT
| Counts words of a specified size in a DNA sequence
|
|
|
|
| Data-fields in SRS |
|
| Loaders |
|
| SRS Description |
Structure
(
srsgen.i
,
srsdb.i
,
href.i
)
Syntax
Information
|