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Name

CUSP

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Status The current release has 0 entries and was indexed 07-Sep-2004.
Creation date Spring 2000 - written
Description CUSP application details page

Create a codon usage table

Reads one or more coding sequences (CDS sequence only) and calculatesa codon frequency table.

The output file can be used as a codon usage table in other applications.
Literature None.
WWW www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/cusp.html
Ftp The latest version of the EMBOSS package is available on ftp://ftp.uk.embnet.org/pub/EMBOSS/
Contact This application was written by Alan Bleasby (ableasby@hgmp.mrc.ac.uk)
See also
CAI CAI codon adaptation index
CHIPS Codon usage statistics
SYCO Synonymous codon usage Gribskov statistic plot
Data-fields in SRS
Field Name
Short Name
Type
No. of Keys
No. of Entry References
Indexing Date
Status
ID id id 0 0   not indexed
JobName jnm index 0 0   not indexed
Loaders
EMBOSSDNASIMPLESEQ
EMBOSSPROTSIMPLESEQ
SRS Description Structure ( srsgen.i , srsdb.i , href.i )
Syntax
Information
SRS Release 7.1.3    Copyright © 1997-2003 LION bioscience AG. All Rights Reserved. Terms of Use Feedback