| |
|
| delete |
|
| getData |
| Get data for this entry.
|
| dtName |
  |
| Name of the class of the object of requested data type.
|
|
|
|
|
|
| getJob |
| Returns the job object opened for entry.
|
|
Job
|
|
| getSeq |
| Get the sequence for this object. If it is not a sequence
databases an undefined (?) is returned.
|
| format |
|
| Format to print the sequence in. Options include
"embl", "swiss", "fasta", "plain", "genbank", "pretty",
"pir", "gcg".
If no format specified, fasta is used.
|
| dbName |
|
| Use this dbName in the entry name. Default is to use the
entry's library name.
|
| inputFormat |
|
| Format of the sequence in the flatfile. Options include
"embl", "swiss", "genbank"
If no input format is specified, embl/swissprot (i.e.
the line before the sequence starts begins with SQ and
the line after the sequence ends uses "\\"
|
|
|
|
|
|
| inSet |
| Returns true if the entry is in the set, otherwise 0.
|
| set |
Set
|
| The set to check in.
|
|
|
|
|
|
| lib |
| Returns the actual library object of the library
the entry is from.
|
|
Library
|
|
| libName |
| Returns the library name the entry is from.
|
|
|
| link |
| Link the entry to a library and return the set of
linked entries.
|
| to |
|
| The name of the library to link to.
|
|
|
|
|
Set
|
|
| load |
| Creates an Object Loader object from the entry.
|
| loaderName |
|
| The name of the loader to use. The loader specifies the
object returned and where the attributes of that object
come from.
|
|
|
|
|
|
| name |
| The name (ID) of the entry
|
|
|
| next |
|
| parentLib |
| Returns parent library if the entry is a subentry.
|
|
Library
|
|
| str |
| Return the entry as a string. If no tokenList or field is
specified then the whole entry is returned.
|
| tl |
|
| A token list can be specified to retrieve.
|
| field |
|
| Alternatively a field can be specified and a string for
that field is retrieved.
|
| format |
|
| The format to use if there are formats available.
|
| type |
table |
|
| sep |
|
| The seperator to use if there a mulitple values.
|
| useStream |
n |
| y n |
| Specifies whether the method should print to a stream
already opened.
|
|
|
|
|
|
| tokens |
| Returns specified token list from entry.
|
| name |
|
| The token to return.
|
| field |
|
| The field to get.
|
| type |
table |
|
| parent |
n |
| n y |
| If y, then the field or token is taken from the parent
library.
|
|
|
|
|
TokList
|
|