Copyright 2014 ©
Developed by Meimei Liang ,
Futao Zhang, Gulei Jin, and
Jun Zhu
| Features of the Software |
First genetic entropy was exploited to filter out some genes with no mutation or small mutation in the raw data preprocessing step.
Then Pearson Correlation Coefficients were calculated.
At last we normalized these coefficients and used False Discovery Rate to control the multiple tests.
All these calculating procedures were implemented on GPU.
We also compressed the coefficient matrix to save the space.
The R code was developed by Meimei Liang.The GPU code, OpenMP code for Multi-core computing and Single Thread C/C++ code were developed by Futao Zhang. |
| What are in FastGCN repository |
1. Source code of GPU implementation. 2. Source code of Multi-core CPU implementation. 3. Source code of Single-thread C/C++ implementation. 4.Source code of Single-thread R implementation. |
| System Requirements |
| Operation System: Windows, Linux and Mac OS. |
| Source Code Downloads |
Version v1.1 (10/26/2014)
Missing data Imputation and Modules Identification were added!
User Manual(v1.1): FastGCN_Manual.pdf GPU Implementation(v1.1): FastGCN GPU Multi-core Implementation(v1.1): FastGCN OpenMP C/C++ Implementation(v1.1): FastGCN C/C++ R Implementation(v1.1): FastGCN R |
Version v1.0 (07/01/2014)
User Manual: FastGCN Manual.pdf GPU Implementation: FastGCN GPU Multi-core Implementation: FastGCN OpenMP C/C++ Implementation: FastGCN C/C++ R Implementation: FastGCN R |
| Executable Binary Code Downloads |
Version v1.0 (07/01/2014)
GPU Implementation for Windows: x64 x86 Multi-core Implementation for Windows: x64 x86 C/C++ Implementation for Windows: x64 x86 GPU Implementation for RHEL6.5: FastGCN GPU Linux Multi-core Implementation for RHEL6.5: FastGCN OpenMP Linux C/C++ Implementation for RHEL6.5: FastGCN C/C++ Linux |
| Simulation Datasets |
| Citation |
Meimei Liang, Futao Zhang, Gulei Jin and Jun Zhu* (2014) FastGCN: A GPU Accelerated Tool for Fast Gene Co-expression Networks. (Submitted) |
| Feedback |
If you have any question or comment with our software, please contact to Prof. jzhu@zju.edu.cn. |
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