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circRNA ID
osa_circ_000017
Alias
NA
Organism
Oryza sativa
Position
chr1: 64902-65431
Reference genome
RGAPv7
Type
exonic
Parent gene
Parent gene annotation
snurportin-1, putative, expressed
Strand
-
Alternative splicing
Splice junction sequence
GAATCGGTGGAGAATGGATCCATTTCGGAGCCTGCTAATGGTGATGCCGTTGCAAGAGACGACC
AAGCACCGTTTCCCGGCAGGTCTGGCAAAAACATGCttgttgtaaaacagcaagccatctttca
catatggtgtgcttcctgagtatgctgcttgaagaccctgaagcgtgcactcgtatatagggac
agcactga
Support reads
1
Tissues
shoot
Exon boundary
Yes-Yes
Splicing signals
AC-CT
Evidence 1: Sanger sequencing
NA
Evidence 1: PCR primers
NA
circRNA sequence
NA
Number of exons covered1
NA
Evidence 2: Sanger sequencing
NA
Evidence 2: PCR primers
NA
Genomic sequence
TTGTTGTAAAACAGCAAGCCATCTTTCACATATGGTGTGCTTCCTGAGTATGCTGCTTGAAGAC
CCTGAAGCGTGCACTCGTATATAGGGACAGCACTGAATCTGTAGCGATGGTACGTTGATGGAGG
ATCACCAGCAGTGGTCTCCATGAGCTTAGAATTCACCCAAAAGAACCTAAACTCAGCGGTGCAG
TCGTACAAGGAGTAGCCTCTCCAACAGATCATATCAATGATGTAATATGTTTCATCAGGCTGCA
GCACAAGAGAGACGACAACGTTATGAATGAACAAGCCAAAAACGAAAGAAAGAAAAGGCAGGTC
AAGAAGGATGGATCAGGTGGTAGCACCTCATGAAAGATGCAATCAAGGATGGAATAGGAACTTG
CTGGTCCGGAGATGTCTCTCTTTGATCCATTTGGAAGAGCGGAAGGGAATCGGTGGAGAATGGA
TCCATTTCGGAGCCTGCTAATGGTGATGCCGTTGCAAGAGACGACCAAGCACCGTTTCCCGGCA
GGTCTGGCAAAAACATGC
Number of exons covered2
LOC_Os01g01130.1:2
Conserved circRNAs
NA
Sponge-miRNA1
NA
Sponge-miRNA1-mRNA
NA
Sponge-miRNA2
NA
Sponge-miRNA2-mRNA
NA
Sponge-miRNA3
NA
Sponge-miRNA3-mRNA
NA
References
this study

Copyright©2017 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
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