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circRNA ID
osa_circ_000014
Alias
NA
Organism
Oryza sativa
Position
chr1: 36818-40189
Reference genome
RGAPv7
Type
exonic
Parent gene
Parent gene annotation
decarboxylase, putative, expressed
Strand
+
Alternative splicing
Splice junction sequence
GTAGTGGAACAGTATTTCTAATGGATACTTGTGCTTGGTTTCCAGGTTATATGGAAAATACAGG
TCATATCATGGAAGTGTCGAAGAAAATACAAAGAGGttatattgctgggagtgaatccgaaggt
cattttgcattgataaacaaggcttactctatgtaagacttgggattttgaccctgtctcaatc
tctattta
Support reads
1
Tissues
shoot
Exon boundary
Yes-Yes
Splicing signals
AG-GT
Evidence 1: Sanger sequencing
NA
Evidence 1: PCR primers
NA
circRNA sequence
NA
Number of exons covered1
NA
Evidence 2: Sanger sequencing
NA
Evidence 2: PCR primers
NA
Genomic sequence
TTATATTGCTGGGAGTGAATCCGAAGGTCATTTTGCATTGATAAACAAGGCTTACTCTATGTAA
GACTTGGGATTTTGACCCTGTCTCAATCTCTATTTAAATAGAATATATAGACAATAATTGGTCA
CCATGTTTTCCAATAGGAGGGCGACTTAAGAAAGTATATAATAAAGTGTATTTATTGTTTTATT
TATGCTCTGTTGCGTTGGTGGAAGAAAAAAAGTAATTTGCATAATTTTATTTTTTTCCCTAGGG
AATACCGTCATAAAATTCATGTCAGCCTGTCTCAACTATCAAGATAAATAGTCCACTAGATTAC
TTCAAATGTATAGTAGGGAAACATATGTTCTTCCAGATTCAAACCAAGTGCCTCTGTTAGTATT
TTGGTGAATTGACTTATTTATAACTCATATTTCAAAGTTACCATGTAGTCCCTCCATCCCAATT
GATCATCATATATATTTATGCACCAAGACCAAAGATAATTTAAATCACATCAATCGAGACACCA
TGCACACATTCTCCCCACATACATGCATCGATTAAAACATCATGCCAATTACATCCTTAGCATG
TACACATTCTCCCTTGCTACATTAATTGTATTCTGATGAAACCCGTGTCCATGCGGTTATGTAA
TGATCAATTTGAGAAATTTTGGATTTCATTATATGATGATCAATTTGGGAAGGAGGGAGTAACT
TTTTCTAGTTTTTATAGGCCTCCATCTAATTTTAGGCTTCTAATTTACCATAAATATTCTTAAT
CCTTTCAGGTTTTCACACACCAACCCACTTCACCAGGACGTATTCAAGAGTGTGGCACAATTAG
AGGCTGAAGTAGTTGCAATGACAGCTGCTTTGCTTGGCATCAAAGAAAAATCATCCGGTGGACA
GATTTGTGGTAATATGACATCGGGCGGAACTGAAAGCATATTATTAGCAGTAAAAACATCACGC
GACTATATGCGAACAAAGAAGGGCATTACAAAGCCTGAAATGTGAGATAAATGATGGATTATGT
TATGCATTGTGATCACCTTATCTCCATGGTAATAAAGGCTTGTGATACAGGATAATTGCCGAAT
CAGCACATTCTGCATACGATAAAGCTGCTCAATATTTCAATATTAAAGTGCGGCGTGTGCCAGT
GAACAAAGAGTTTCTTGCAGATGTGAAAGGATTCAAAAGGTGTATAAACGGAAATACGATAATG
GTGAGATTTTATCCATATTCCTGTTTCTCTAGTTAGCTTAAAGCTGTTCTGATGCCTCCATTCA
CCTGAGATGAAAGATATTTGCATTTGTCTTTTCCTAAGGAAAGATTAGTATGTACCTTCTGACC
CTGTGACCTTTTATAAGGAAAGATTAGTCTTTACCTTTACCTTCTTCCTACTCTTACATTTCTT
AGTGTACATGTAAATATGTAAATGTTCCCTAACAATTTTCTGTTGCACAGATGGTGGGGTCTGC
ACCAGGATTTCCTCATGGTTTAATTGATCCTATTGAGGTATGTTAATCAATCATCGTTATGTTA
AAGAAAACCAAAAATATTTTTTCCTACTGAAATTGTGCACTGCAAGTTCAGTGATTTCTTGTAT
CCCGGATCATCTTCAGGAACTTGGGGAGTTGGCTTCACGATATGACATTTGCTTGCATGTTGAT
CTCTGCCTTGGTGGATTTGTATTGCCTTTCGCTCGTAAGCTTGGGTACCTACTTACTTCATAAC
ATGATATCTTACCATTATTATTAGCACTTGAGCAAATTTTGAATAGCTCGCCAATATACACATT
TAATCATTTTCTTACAGCAACATGATGGTTTGCCTATTAATGATTGCTTTAATTTCAATAGAGG
AGGTCTCAAACTGTCTACATAAGCAATTTGTTGATACCTGTATTATATTGCTTTTCACCTATAA
TCTTGGGTATTCCTTCATGACCATTCATTTGTTCCCTTTATCTGGATTTACTCGACTGTTCTCA
GATGATGTTCTGATTTCTTATCAGTAATTTCAGCATTTGCATGAACTTTGAAGAACTTGCCAGA
ACATTACGTAATATTCACTTTTTTAATCATGTAACATGATGGTTTGCCTGTTAATGATTGTTTT
AATTTTGTCCCGAACTGCCACCAACTGTGAACTAAAAACCCAAAGGTTATGGCCATGTATAACC
ACATATGGAACAAGTGTGTGCTTACTATCGCAATACCCAAGCTAATGTGAAGTGAACAAATATG
CAAATTTTTGCTAATCCCTAGTCATAGATCAGGTCTGATGAATCTGGACTGGTTTAAAGCAATC
TTATGATAGTTACTTATCTTAATGTTCATTTATGTCCCATTTATTGGTTTTAGATACTTGAAGT
ATATGTCTCTTTTGTTAGAAATGATGTGTTATAACTTCAATCATATATGGCATCCATTTTGTCA
AGGCCATTGTTACATCTCTGATTGAACTAATGTTATGTGTACTAATTCTATGACTTCTCTGCAA
TACAGGTACCCTATTCCTCCATTCGACTTCTGTGTCAAGGGAGTTACATCAATCTCAACTGATG
TTCATAAGTATGGATTAGCCCCAAAAGGGACAAGCATTGTCCTATATAAAAATCATGAAATTAG
AAAGGTAAAAATAGCCTTGGAGTATTTTTCTCTTTACTTTTCTCAGATATTCTAACATTATTCC
CTCCATCTATTTGGCACTGGCATCTTGGATACTACCACCAAATTCAGCATCAATTTGTTGCTGG
TAAGCTTCAATCATTTCCTATGAAACTTCTCTCTTGAGTAAACCTTTTTAAGGGGTTCTCACTT
CTCAATAAAATTTTGACCTCTATATTTATTCGACAGATATCATGGTTGTCGTTACATAACTATT
ACAGCTTAACAGATATGATCATGTTGCAAAACTGCACGAAAATGTTCAAACAGGGTAGAATATT
TCTTACATGATTATGGTAACTTTGGTTGGAAGAACGTAGATTCATGCAATGCAAATGGTAGTTT
GCGTCCTAGTAGCCCTTGGCTTACTTTCCACTATCTGACATGAGCAACGAATCTTGAACCAAAG
TTTGAATAGTGGTTTAATGTGGGGATTTTGCTTCCTTATTTTTTTTCAGTTACTGAATGGACTG
GTGGGCTCTATGTTTCACCTACTATTGCTGGAAGTAGGCCTGGTGGGTTGATAGCGGGAGCTTG
GGCTGCTATGACGTCTCTTGGACTGAACGGTAACAGGTTTATTCAGAAGTTGACCAGTCCAGTG
GTAGTTTAGTAGTGGAACAGTATTTCTAATGGATACTTGTGCTTGGTTTCCAGGTTATATGGAA
AATACAGGTCATATCATGGAAGTGTCGAAGAAAATACAAAGAGG
Number of exons covered2
LOC_Os01g01080.1:9
LOC_Os01g01080.2:9
LOC_Os01g01080.3:9
Conserved circRNAs
NA
Sponge-miRNA1
NA
Sponge-miRNA1-mRNA
NA
Sponge-miRNA2
NA
Sponge-miRNA2-mRNA
NA
Sponge-miRNA3
NA
Sponge-miRNA3-mRNA
NA
References
this study

Copyright©2017 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
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