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circRNA ID
osa_circ_000013
Alias
Os_ciR6272
Organism
Oryza sativa
Position
chr1: 36818-38033
Reference genome
RGAPv7
Type
exonic
Parent gene
Parent gene annotation
decarboxylase, putative, expressed
Strand
+
Alternative splicing
Splice junction sequence
TCAATATTTCAATATTAAAGTGCGGCGTGTGCCAGTGAACAAAGAGTTTCTTGCAGATGTGAAA
GGATTCAAAAGGTGTATAAACGGAAATACGATAATGttatattgctgggagtgaatccgaaggt
cattttgcattgataaacaaggcttactctatgtaagacttgggattttgaccctgtctcaatc
tctattta
Support reads
2
Tissues
root
Exon boundary
Yes-Yes
Splicing signals
AG-GT
Evidence 1: Sanger sequencing
NA
Evidence 1: PCR primers
NA
circRNA sequence
NA
Number of exons covered1
NA
Evidence 2: Sanger sequencing
NA
Evidence 2: PCR primers
NA
Genomic sequence
TTATATTGCTGGGAGTGAATCCGAAGGTCATTTTGCATTGATAAACAAGGCTTACTCTATGTAA
GACTTGGGATTTTGACCCTGTCTCAATCTCTATTTAAATAGAATATATAGACAATAATTGGTCA
CCATGTTTTCCAATAGGAGGGCGACTTAAGAAAGTATATAATAAAGTGTATTTATTGTTTTATT
TATGCTCTGTTGCGTTGGTGGAAGAAAAAAAGTAATTTGCATAATTTTATTTTTTTCCCTAGGG
AATACCGTCATAAAATTCATGTCAGCCTGTCTCAACTATCAAGATAAATAGTCCACTAGATTAC
TTCAAATGTATAGTAGGGAAACATATGTTCTTCCAGATTCAAACCAAGTGCCTCTGTTAGTATT
TTGGTGAATTGACTTATTTATAACTCATATTTCAAAGTTACCATGTAGTCCCTCCATCCCAATT
GATCATCATATATATTTATGCACCAAGACCAAAGATAATTTAAATCACATCAATCGAGACACCA
TGCACACATTCTCCCCACATACATGCATCGATTAAAACATCATGCCAATTACATCCTTAGCATG
TACACATTCTCCCTTGCTACATTAATTGTATTCTGATGAAACCCGTGTCCATGCGGTTATGTAA
TGATCAATTTGAGAAATTTTGGATTTCATTATATGATGATCAATTTGGGAAGGAGGGAGTAACT
TTTTCTAGTTTTTATAGGCCTCCATCTAATTTTAGGCTTCTAATTTACCATAAATATTCTTAAT
CCTTTCAGGTTTTCACACACCAACCCACTTCACCAGGACGTATTCAAGAGTGTGGCACAATTAG
AGGCTGAAGTAGTTGCAATGACAGCTGCTTTGCTTGGCATCAAAGAAAAATCATCCGGTGGACA
GATTTGTGGTAATATGACATCGGGCGGAACTGAAAGCATATTATTAGCAGTAAAAACATCACGC
GACTATATGCGAACAAAGAAGGGCATTACAAAGCCTGAAATGTGAGATAAATGATGGATTATGT
TATGCATTGTGATCACCTTATCTCCATGGTAATAAAGGCTTGTGATACAGGATAATTGCCGAAT
CAGCACATTCTGCATACGATAAAGCTGCTCAATATTTCAATATTAAAGTGCGGCGTGTGCCAGT
GAACAAAGAGTTTCTTGCAGATGTGAAAGGATTCAAAAGGTGTATAAACGGAAATACGATAATG
Number of exons covered2
LOC_Os01g01080.1:3
LOC_Os01g01080.2:3
LOC_Os01g01080.3:3
Conserved circRNAs
NA
Sponge-miRNA1
NA
Sponge-miRNA1-mRNA
NA
Sponge-miRNA2
NA
Sponge-miRNA2-mRNA
NA
Sponge-miRNA3
NA
Sponge-miRNA3-mRNA
NA
References
Ye et al., 2015

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