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circRNA ID
osa_circ_000010
Alias
NA
Organism
Oryza sativa
Position
chr1: 33277-33617
Reference genome
RGAPv7
Type
exonic
Parent gene
Parent gene annotation
expressed protein
Strand
+
Alternative splicing
Splice junction sequence
GCATCTAATTATTTTTCTTTTGCAGGTTGTGCATTCTCCTACAACTATGTCGGCATCAGGACTG
AGTATGCTAGTTGAAACATCAATGCCACCTAAAAGGgtcttatcatcaactcctcttccagcta
ttgaattgccagagagaattacaagggtaaagttgtgcacctttttgaatgttaacatgatttg
gattatct
Support reads
1
Tissues
root
Exon boundary
Yes-Yes
Splicing signals
AG-GT
Evidence 1: Sanger sequencing
NA
Evidence 1: PCR primers
NA
circRNA sequence
NA
Number of exons covered1
NA
Evidence 2: Sanger sequencing
NA
Evidence 2: PCR primers
NA
Genomic sequence
GTCTTATCATCAACTCCTCTTCCAGCTATTGAATTGCCAGAGAGAATTACAAGGGTAAAGTTGT
GCACCTTTTTGAATGTTAACATGATTTGGATTATCTGACCTTTTATTTTCTTACCACAGGCTGC
TTCTTTGCCTCCAAGTTCAGAACCGGAGTTTTCTGGCCCTCGATCACCTGTAACAGAGGCATCT
AAGGTCAGGTCTGGTTTTGTGTCTGAGGACATGTTTGACCTGGGTTATTGCATCTAATTATTTT
TCTTTTGCAGGTTGTGCATTCTCCTACAACTATGTCGGCATCAGGACTGAGTATGCTAGTTGAA
ACATCAATGCCACCTAAAAGG
Number of exons covered2
LOC_Os01g01070.1:3
LOC_Os01g01070.2:3
LOC_Os01g01070.3:3
Conserved circRNAs
NA
Sponge-miRNA1
NA
Sponge-miRNA1-mRNA
NA
Sponge-miRNA2
NA
Sponge-miRNA2-mRNA
NA
Sponge-miRNA3
NA
Sponge-miRNA3-mRNA
NA
References
this study

Copyright©2017 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
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