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circRNA ID
osa_circ_000008
Alias
NA
Organism
Oryza sativa
Position
chr1: 31505-32908
Reference genome
RGAPv7
Type
exonic
Parent gene
Parent gene annotation
expressed protein
Strand
+
Alternative splicing
Splice junction sequence
TTTTACTGAAATGTCTTAGGATCGTACAGCACGAGGAATTTATGACTTATGCGAGTTCACTAAA
AGGCTGGATAAGAGCCCCAAAACTGATACTCGTCAGggttggaaactttctgatttgatgtttg
tgacgaagcgtggcttatctgatgcctgcgatgtggttggcaaacagttggaacatgtttcaga
gaatgtta
Support reads
2
Tissues
root
Exon boundary
Yes-Yes
Splicing signals
AG-GC
Evidence 1: Sanger sequencing
NA
Evidence 1: PCR primers
NA
circRNA sequence
NA
Number of exons covered1
NA
Evidence 2: Sanger sequencing
NA
Evidence 2: PCR primers
NA
Genomic sequence
GGTTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGATGCCTGCGATGTGG
TTGGCAAACAGTTGGAACATGTTTCAGAGAATGTTAATGTAAGTTTCTCCTTCGTTCACTGGAA
TATGAATATTGCACTATTTGAAGCTTTTACATGCATACTGCAATGATCCTATATTTCTCTCTTT
GGGAAGTTGGAACTGTTGTTTGTTGAATGGAGTTCAATCCTTTAACATCCCGTTAAAGTTTGTG
GCATACTGTATGTCAATCACTATTGGACTGCCACCTCAAATGAGAGAGTACACATCAGGCCGCT
CAATTAAAATGGTTAAAGGGGAAATATCTAGTGAAAACCATCAAATAAATGAAAACCTGTGAAA
ACCGGACCGAATCTAAATTCATAACAGTTTCCTATTACTGTTCACCTGAAATTTGTCTTTTTTG
TTCCTCCCAAATGAAGTTGAGTTTTTACTTAAGATTTGGTGGGAATGTTGCCTCTAGTTTTTTT
TTCATGAATTTAGAGAACTTTTAGGTCCGGTTTTCACTTATTTGATGGTTTTCACCAGATATGT
CCACATGGTTAGAATACCTTGGATTTGCAGGATGACCTTTCTTGGATATGAACATTTACAATTA
TGTGTTGTTTTTGTATATGGCATCTTTATAATTCTATTAAGCATTCTTGACCTATTTGGACCAA
ACAAGAAAAGTTAACCTGAGAAAACAAAACAGAATCTATGATTCCCACCTCCCACTAGATATGC
CTCTGAACATTTTGAGGCTAGCTTTGTTATACTGTTGCATCTGCGTGTGCTTACTCCCACTGTT
TGATTCAAATTCGTGTTTATGTGCAATCTTCTGATATCAGGCTGCAAAGAGGCATCTGGCAGGA
AGAATAGATCATGTAGATTGTACTTTAGATGAATGCCAGGAAATTACAGAATCCACAAGAAAAG
AGGTTTGAATGCTCAAGCATTATGTTAATAGGATTTTATATAGTTTATTGGAGGTTGATACAAA
ATTAATTCAATAGGTTACAGTCATCCATGAAGATATAAGTGCCTTCCAGGAGGAAATGCAATCA
GTTCATCTTGTGGTTCGTACTCTGGTAGGTGCCTTGTATTCCGCATACACTTCTTTTTCAAGAT
AACTCTTTTCCTCACTGGTGCTAGATGGAAACTGACTTCTTCCCTTGTACTACAGGAGACAAAG
CTTGGACGTCTTTCATATACCCAAGTAATTAAGAGTTTGCAACAATATAACTTGCTTTACCCCC
AGAAATATGCATTTTGCTAACCTCTTTTACTGAAATGTCTTAGGATCGTACAGCACGAGGAATT
TATGACTTATGCGAGTTCACTAAAAGGCTGGATAAGAGCCCCAAAACTGATACTCGTCAG
Number of exons covered2
LOC_Os01g01070.1:5
LOC_Os01g01070.2:5
LOC_Os01g01070.3:5
Conserved circRNAs
NA
Sponge-miRNA1
NA
Sponge-miRNA1-mRNA
NA
Sponge-miRNA2
NA
Sponge-miRNA2-mRNA
NA
Sponge-miRNA3
NA
Sponge-miRNA3-mRNA
NA
References
this study

Copyright©2017 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
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