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circRNA ID
osa_circ_000003
Alias
Os_ciR5815
Organism
Oryza sativa
Position
chr1: 19791-19915
Reference genome
RGAPv7
Type
exonic
Parent gene
Parent gene annotation
expressed protein
Strand
+
Alternative splicing
NA
Splice junction sequence
CTATTAATCAGCATGTTGGCTGCTGCCGAGGTCAGGCCAGAATCCTCTTTGATTTTCATGGGAt
accagagaggttttcttgtatgtatgttgcaacaaatggggagaaatgtacggagttttaa
Support reads
2
Tissues
root
Exon boundary
No-No
Splicing signals
AC-CT
Evidence 1: Sanger sequencing
NA
Evidence 1: PCR primers
NA
circRNA sequence
NA
Number of exons covered1
NA
Evidence 2: Sanger sequencing
NA
Evidence 2: PCR primers
NA
Genomic sequence
TACCAGAGAGGTTTTCTTGTATGTATGTTGCAACAAATGGGGAGAAATGTACGGAGTTTTAACT
ATTAATCAGCATGTTGGCTGCTGCCGAGGTCAGGCCAGAATCCTCTTTGATTTTCATGGGA
Number of exons covered2
LOC_Os01g01040.1:0
LOC_Os01g01040.2:0
LOC_Os01g01040.3:0
LOC_Os01g01040.4:0
Conserved circRNAs
NA
Sponge-miRNA1
NA
Sponge-miRNA1-mRNA
NA
Sponge-miRNA2
NA
Sponge-miRNA2-mRNA
NA
Sponge-miRNA3
NA
Sponge-miRNA3-mRNA
NA
References
Ye et al., 2015

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