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circRNA ID
osa_circ_000001
Alias
NA
Organism
Oryza sativa
Position
chr1: 17558-18258
Reference genome
RGAPv7
Type
exonic
Parent gene
Parent gene annotation
expressed protein
Strand
+
Alternative splicing
NA
Splice junction sequence
TTGCAAAACCCTATGGATGGAATAATAAATACTACACTCTACATAAGCTATCTTTCCAACTACA
TTGTGGAGATTAGCAACGAAAATGTGCTAGGCCCAGgctgctgtaccaagccatccaaagacgc
aacattgaagtgcatcgggtcaaaccagccaatgctcctgatttgttgtcttttgtcaatgata
tcgagttc
Support reads
1
Tissues
root
Exon boundary
Yes-Yes
Splicing signals
AG-GT
Evidence 1: Sanger sequencing
NA
Evidence 1: PCR primers
NA
circRNA sequence
NA
Number of exons covered1
NA
Evidence 2: Sanger sequencing
NA
Evidence 2: PCR primers
NA
Genomic sequence
GCTGCTGTACCAAGCCATCCAAAGACGCAACATTGAAGTGCATCGGGTCAAACCAGCCAATGCT
CCTGATTTGTTGTCTTTTGTCAATGATATCGAGTTCCACATAACCACCATCTCTAGCATGTCTT
GCTCTCAGTTGGTTGCCCCTTCTACAATTGCAATGGGAACACCTGGATCTATGGACTTCAGGCT
GCTGCCTTTGTCAACATTGTTGACATACAATTGCCAGAACACGAGCCAGGGGCCATCTGTTTCA
CTCAAGTGCAATGGCTGCAGAATCCCGCCAAGAGACCACTACGTATCCTGGCAATTTATTGACC
TGCCAAGGCAACCAGCTGCCGCTGTTGGCTTCCAGTTTAATCTCACTGCGAAGCAACATGGAGA
TGACAAACATGTGAGCTCTGTCAGTGGAACTATAAACTCCGACAATTTTACTGATGACAAGCTG
AAGACATTCAGAGGGAGAGATTCCAATGTGCTCAAGATTCAATTGTTTCCTCAAACATACATCA
ATCATCACAATTTGAAGCTTCTGCAACCTCTGGTTCAGGACTTCACTCAAGGTTCTACCTTTTC
AAATGTTAGAAACTTGAATGCTTCCTTGCAAAACCCTATGGATGGAATAATAAATACTACACTC
TACATAAGCTATCTTTCCAACTACATTGTGGAGATTAGCAACGAAAATGTGCTAGGCCCAG
Number of exons covered2
LOC_Os01g01040.1:1
LOC_Os01g01040.2:1
LOC_Os01g01040.3:1
LOC_Os01g01040.4:1
Conserved circRNAs
NA
Sponge-miRNA1
NA
Sponge-miRNA1-mRNA
NA
Sponge-miRNA2
NA
Sponge-miRNA2-mRNA
NA
Sponge-miRNA3
NA
Sponge-miRNA3-mRNA
NA
References
this study

Copyright©2017 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
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