Detail information of Csa1G652810_circ_g.1


General Information
CircRNA Name Csa1G652810_circ_g.1
ID in PlantcircBase csa_circ_000670
Alias Chr1:26027233_26030468
Organism Cucumis sativus
Position chrChr1: 26027233-26030468  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa1G652810
Parent gene annotation NA
Parent gene strand -
Alternative splicing Csa1G652810_circ_g.2
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa1G652810.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCATACCTTTACTGATAGGTTAACCTCATGTTTGGGTTTAATGTCAACTTGGATACTGCAGGA
AGGAGCATCGGTCTCAACACCTTTCTCACAAAGAGGctccagctgtttcaatgatgattcatta
gggatcaaacaggaacgtaaggcaagaacaacactgaacttttcaaaaataggaatactccgag
aatgagaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 657
Transcript exons: 26027233-26027349,26027437-26027622,26028974-26029073,26
029197-26029255,26030170-26030271,26030376-26030468
CTCCAGCTGTTTCAATGATGATTCATTAGGGATCAAACAGGAACGTAAGGCAAGAACAACACTG
AACTTTTCAAAAATAGGAATACTCCGAGAATGAGAAGGCATTTGGATCTCCATCTCCACATCCC
GTAGTTGGATATCGAAGTGATCATACAGATTTTGAGGCTGAACTGTAAAAGCAATATCAGAGGC
CAAATTTGGATCACTCAAGCGTTTTAGCATAACAGATTGTTCTTTAAATCTTGAAGTTAGTGAA
CTCCAATCATATTTCGATGTTACACAAAGAGTGGCCACTTGTAGTACCAAGCTATTTTGTTGTG
AAGGTGTACGCCAAGGGACGTGGACTGTAATGCCATTGACAGTAATGTCCCACATCACTTTCTT
ATATCCTGACATTATGCATTGAGCCTTGGATAGCAATCGAGCTTTGGAATTTTCAATTCCATTT
AGAGTTGAAAGAACCCTTCTGTGAAGAGATTCGAAGGACTTAAGTTCATCAAAAAACTCCGACA
GACAAAGAAAAAACTTGGAATCATAAGTAACTACTAATGGATTCAGCATCACCTTTACTGATAG
GTTAACCTCATGTTTGGGTTTAATGTCAACTTGGATACTGCAGGAAGGAGCATCGGTCTCAACA
CCTTTCTCACAAAGAGG

Genomic sequence CTCCAGCTGTTTCAATGATGATTCATTAGGGATCAAACAGGAACGTAAGGCAAGAACAACACTG
AACTTTTCAAAAATAGGAATACTCCGAGAATGAGAAGGCATTTGGATCTCCATCTACAAAATAT
TGGTTCTCATCTCAAATTATTTTCTTATGACAACATTGGAACAAGTGCAAAGAACATAAAAAGG
AAGGAAAGTAACCTCCACATCCCGTAGTTGGATATCGAAGTGATCATACAGATTTTGAGGCTGA
ACTGTAAAAGCAATATCAGAGGCCAAATTTGGATCACTCAAGCGTTTTAGCATAACAGATTGTT
CTTTAAATCTTGAAGTTAGTGAACTCCAATCATATTTCGATGTTACACAAAGAGTGGCCACTTG
TAGTACCTGCCAAGAGCAGCATAGAAAGATAAAATTAGCTGAGAAGTTTATATATGCATACTTT
TCAGGAAAAAAGAATATTGTTACTGTACTTCTCACTTATCTGAAACAACCACAGGGTTTCTTAT
ATAGGAGAAAGACCACTAACCAACAATGAAATATTACGAGTTTAAATAATAAATATACAAAATA
ATACACAAATAATATAAGGAACTCCAACCCCTCTCAAAATGGTTTGTAGATATCTTCCATAGCC
AGCATATCGATAAGTTTATCAAATTGCCTTTTCGAAAGACTTTTAGTTAACATATCATCCATCT
GTTTAGTTGCTGAAAAATAATATGCATATTACGTCTGCATCAATCTTCTCTTTTATGAAATGTT
TGTCAACTTCGATACGTTTCATCTTATCATGCAAGATTGCATAATGAGCTAGGGTGATGGTAGC
CTTCTTATCACAATAGATTTGTTTTTTTTTTAAACAGAAACAAGCCTCTTTATTAATAATAAAT
AAATGAGACTAATGCTCAAAGTACAAGAGAATTATACTAAGAGCAAAATAAGAAAAGGAAAAAA
TCATCCAAATTGGCGATCGGGGAAACTAGATTGAATCTCATCAGATGAAGGTGGTCCAATTGAA
TTCTGCATTTGAAGAACACCAAGTTGCTGCGTTTCTTTTAGAAATCTCTACGATGTCAACCCAA
TCCCTTTTTTTATCATAGAAGATGCGTTGGTTACGTTCAAACCAAATCTTAGCTAGAAGCGCTT
TTATCAAATTAACCCAAATTAGAAAAGGCTTTTTTGATAAATAAGGCCCCCTCAGTAATTGGCG
CACATTGGCGCTAAACGAACCATCAAAAACCCAAACTGATTTGAGCATGGAAAATATGCATGGC
AAGCATTTTATTAAAGAAGACCCTAATATTGGAGCAATTGTAAGTTTTGTGTCGTGTCCTTTTG
ACAACTCAAGGGAAGCACTTTTAACTCTGAGTTGTTTCCATATAACTTAAGGACACAGCTGTAC
ACTATAGAACAGATCATGACATTTAATTCCAAGAAAACTTTATCTTTTTCGATTTCCAAAAATA
AAAATAAGGTCACCTCATGTGGAGGTGAGATTCATCGCAAAAAGAAATCTATCACAATAATATC
ATAATAACGAGCCTACGGCTAATTAGAAAATAATAGAATAAACATTTACTAGAATAAAAACTAA
ACCAAAGTCCTAAAAAATAAGGACAAAAATAATCATACCACCCAACATAGTAAACTTCAGGTGT
GTTTCAATGGAAACGCCTAAAAGTGCATTCCCGAAAAAAAAAAAACATGTTCTTGCAGCATAAA
CAAGGACACTTACCAAGCTATTTTGTTGTGAAGGTGTACGCCAAGGGACGTGGACTGTAATGCC
ATTGACAGTAATGTCCCACATCACTTTCTTATATCCTGACATTATGCATCTGGAGGATCAGAAA
CAACAAACAATGACAGTGCGCACATGGAGTAAATAAGATGGAATAGATATAGACTACATTAATG
CCTGAATTACCAAGTCATGCAACAATTATACAAGTTAAACTTACTGAGCCTTGGATAGCAATCG
AGCTTTGGAATTTTCAATTCCATTTAGAGTTGAAAGAACCTACAAATAAAAATGCTTTTTAATC
AATTTACAAGCCCATTGAGTGGATATATGAAAACTAACATCACAGCTACATGGATCGGTGCTTT
TAACATCTCTCACAGAAATTGTTCATACATTCAATACATCTACGTCTTTCTCCTGATTATAACT
ATAGTCTACAGACCTTCATGAGTCTTGACACATTGGAGATGTTTTTGTAATAACTCAAAGTTAG
AATTGTTTTGAAATCTATCAATGAAGTGGTCTCAGTTTCCACTCTAAAAATAGTAATATCATAT
TAATGATAATTAATTAATTAAAAGAAAACCCTCCAGTGAGAAGAAAAACTAGTCCAAAACAACA
GTTCAAAGAAAAAGAAAGACTACTCCACATCCTATCAAAGCGACTAGAAAAAACCCTAATGCTG
TATCTTGAGATTTATTCTCTTCTCATTGATTTGAAAGTTCTGTTTACATTTCAAAAAAATAAAA
AATAAACTAGTCAGACAGAGAGGGCTTAAAAATATCTAAAAGAATAATTTAGAGCTACCATGTT
GTTAAAAATTTGAAATCATCAATTAATAGTAGATTTCTTTTGAATATTGAATAACACAACCAAC
TGCTAACAGCTCTAAACAATCAATTAATAGTATTAGACATAAAATGGACATATGTAGGCCTAAG
TCACATATTCCTACTAACAGCTCTAAACAAACTTGTCACAGAAATAAAAAATCATTTTAACTGA
TGCAATAGGATTAAGTTAAATTGGGGTACCTTGGTCAAATTCTTGATATAATAAAAATACTAAT
GCTCAAAAGATATAAACTCCATAAAAGGAGGGAGATAAAGGCTAAAAACCCCAAATTAAAAGGA
ATCAAACTAAAGTAAACAGCCTATAACAGAATAAACAATAGAAGAAAGCAGCCTTACCCTTCTG
TGAAGAGATTCGAAGGACTTAAGTTCATCAAAAAACTCCGACAGACAAAGAAAAAACTTGGAAT
CATAAGTAACTACTAATGGATTCAGCATCACCTGCAAATAATATACAGGAAAAATTGCTGAATA
GTAGCAGACTTCAAATAATGAAAAAAATGGTTCTCCGATCCAGCTTCAAATAGGCACATCAATT
AGCATACCTTTACTGATAGGTTAACCTCATGTTTGGGTTTAATGTCAACTTGGATACTGCAGGA
AGGAGCATCGGTCTCAACACCTTTCTCACAAAGAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.466735641
Functional Information
Coding potential Y
Potential coding position 26030270-26027235(-)
Potential amino acid sequence MLNPLVVTYDSKFFLCLSEFFDELKSFESLHRRVLSTLNGIENSKARLLSKAQCIMSGYKKVMW
DITVNGITVHVPWRTPSQQNSLVLQVATLCVTSKYDWSSLTSRFKEQSVMLKRLSDPNLASDIA
FTVQPQNLYDHFDIQLRDVEMEIQMPSHSRSIPIFEKFSVVLALRSCLIPNESSLKQLEPLCEK
GVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDELKSFESLHRRVLST
LNGIENSKARLLSKAQCIMSGYKKVMWDITVNGITVHVPWRTPSQQNSLVLQVATLCVTSKYDW
SSLTSRFKEQSVMLKRLSDPNLASDIAFTVQPQNLYDHFDIQLRDVEMEIQMPSHSRSIPIFEK
FSVVLALRSCLIPNESSLKQLEPLCEKGVETDAPSCSIQVDIKPKHEVNLSVKVMLNPLVVTYD
SKFFLCLSEFFDELKSFESLHRRVLSTLNGIENSKARLLSKAQCIMSGYKKVMWDITVNGITVH
VPWRTPSQQNSLVLQVATLCVTSKYDWSSLTSRFKEQSVMLKRLSDPNLASDIAFTVQPQNLYD
HFDIQLRDVEMEIQMPSHSRSIPIFEKFSVVLALRSCLIPNESSLKQLEPLCEKGVETDAPSCS
IQVDIKPKHEVNLSVKVMLNPLVVTYDSKFFLCLSEFFDELKSFESLHRRVLSTLNGIENSKAR
LLSKAQCIMSGYKKVMWDITVNGITVHVPWRTPSQQNSLVLQVATLCVTSKYDWSSLTSRFKEQ
SVMLKRLSDPNLASDIAFTVQPQNLYDHFDIQLRDVEMEIQMPSHSRSIPIFEKFSVVLALRSC
LIPNESSLKQLE
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhu et al., 2019