Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d027392_circ_g.4 |
ID in PlantcircBase | zma_circ_006357 |
Alias | Zm01circ00010, zma_circ_0000023, ZmciR75 |
Organism | Zea mays |
Position | chr1: 4245157-4256569 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d027392 |
Parent gene annotation |
Callose synthase 9 |
Parent gene strand | + |
Alternative splicing | Zm00001d027392_circ_g.3 Zm00001d027392_circ_g.5 Zm00001d027392_circ_g.6 Zm00001d027392_circ_g.7 Zm00001d027392_circ_g.8 Zm00001d027392_circ_g.9 Zm00001d027392_circ_g.10 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d027392_T007:11 Zm00001d027392_T012:11 Zm00001d027392_T065:11 Zm00001d027392_T020:11 Zm00001d027392_T011:9 Zm00001d027392_T042:11 Zm00001d027392_T036:11 Zm00001d027392_T052:11 Zm00001d027392_T049:12 Zm00001d027392_T027:10 Zm00001d027392_T055:11 Zm00001d027392_T034:11 Zm00001d027392_T059:11 Zm00001d027392_T041:11 Zm00001d027392_T030:11 Zm00001d027392_T023:11 Zm00001d027392_T002:11 Zm00001d027392_T006:11 Zm00001d027392_T070:3 Zm00001d027392_T068:3 Zm00001d027392_T038:11 Zm00001d027392_T051:11 Zm00001d027392_T067:6 Zm00001d027392_T054:11 Zm00001d027392_T064:11 Zm00001d027392_T033:11 Zm00001d027392_T029:11 Zm00001d027392_T016:11 Zm00001d027392_T045:11 Zm00001d027392_T056:11 Zm00001d027392_T050:11 Zm00001d027392_T015:11 Zm00001d027392_T046:11 Zm00001d027392_T025:11 Zm00001d027392_T069:3 Zm00001d027392_T004:11 Zm00001d027392_T003:11 Zm00001d027392_T062:11 Zm00001d027392_T019:11 Zm00001d027392_T060:11 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.083205176 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4245255-4256566(+) 4245193-4256544(-) |
Potential amino acid sequence |
MSVPCCHGLAEACYRWSAVRLVKWMHQENNYVGRGMHESPLDYIKYATFWIAILGAKFSFTYFL QIKPLVEPTRTIINFTGLQYAWHDFFSKNNHNALTILSLWAPVLSIYLLDIHVFYTVLSAIYGF LLGARDRLGEISTVEAVHRFFEKFPGAFMHRLHVEVPKRKQLLSSGQEIELNKFDASRFSPFWN EIVRNLREEDYINNFELELLLMPKNDVGVLPIVQWPVFLLASKVFLAKEIAEDCKDSQEELWLR ISKDEYMQYAVVESFHSIYHILTSILEKEGRLCKTLQDGTESATFKIYVFVISAYVGIKIIFSL LMSVPCCHGLAEACYRWSAVRLVKWMHQENNYVGRGMHESPLDYIKYATFWIAILGAKFSFTYF LQIKPLVEPTRTIINFTGLQYAWHDFFSKNNHNALTILSLWAPVLSIYLLDIHVFYTVLSAIYG FLLGARDRLGEISTVEAVHRFFEKFPGAFMHRLHVEVPKRKQLLSSGQEIELNKFDASRFSPFW NEIVRNLREEDYINNFELELLLMPKNDVGVLPIVQWPVFLLASKVFLAKEIAEDCKDSQEELWL RISKDEYMQYAVVESFHSIYHILTSILEKEGRLCKTLQDGTESATFKIYVFVISAYVGIKIIFS LLMSVPCCHGLAEACYRWSAVRLVKWMHQENNYVGRGMHESPLDYIKYATFWIAILGAKFSFTY FLQIKPLVEPTRTIINFTGLQYAWHDFFSKNNHNALTILSLWAPVLSIYLLDIHVFYTVLSAIY GFLLGARDRLGEISTVEAVHRFFEKFPGAFMHRLHVEVPKRKQLLSSGQEIELNKFDASRFSPF WNEIVRNLREEDYINNFELELLLMPKNDVGVLPIVQWPVFLLASKVFLAKEIAEDCKDSQEELW LRISKDEYMQYAVVESFHSIYHILTSILEKEGRLCKTLQDGTESATFKIYVFVISAYVGIKIIF SLLMSVPCCHGLAEACYRWSAVRLVKWMHQENNYVGRGMHESPLDYIKYATFWIAILGAKFSFT YFLQIKPLVEPTRTIINFTGLQYAWHDFFSKNNHNALTILSLWAPVLSIYLLDIHVFYTVLSAI YGFLLGARDRLGEISTVEAVHRFFEKFPGAFMHRLHVEVPKRKQLLSSGQEIELNKFDASRFSP FWNEIVRNLREEDYINNFELELLLMPKNDVGVLPIVQWPVFLLASKVFLAKEIAEDCKDSQEEL WLRISKDEYMQYAVVESFHSIYHILTSILEKEGRL(+) MLLTLCHLEVSCRGGLLSLV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |