Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d027442_circ_g.2 |
ID in PlantcircBase | zma_circ_006367 |
Alias | zma_circ_0000665 |
Organism | Zea mays |
Position | chr1: 5435119-5435319 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d027442 |
Parent gene annotation |
50S ribosomal protein L5 |
Parent gene strand | - |
Alternative splicing | Zm00001d027442_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d027442_T001:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.270135727 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5435148-5435316(+) 5435243-5435121(-) |
Potential amino acid sequence |
MVFPSRILKLATDFLALVLTGHCPVIMARSFMAASSPFEFPASAPRPQFTTIFSSLGTLPRRVT AIPMVFPSRILKLATDFLALVLTGHCPVIMARSFMAASSPFEFPASAPRPQFTTIFSSLGTLPR RVTAIPMVFPSRILKLATDFLALVLTGHCPVIMARSFMAASSPFEFPASAPRPQFTTIFSSLGT LPRRVTAIPMVFPSRILKLATDFLALVLTGHCPVIMARSFMAASSPFEFPASAPRPQFTTIFSS LG(+) MKDLAMITGQWPVKTKARKSVASFKIREGNTIGIAVTLRGRVPKLEKIVVNCGLGAEAGNSKGL DAAMKDLAMITGQWPVKTKARKSVASFKIREGNTIGIAVTLRGRVPKLEKIVVNCGLGAEAGNS KGLDAAMKDLAMITGQWPVKTKARKSVASFKIREGNTIGIAVTLRGRVPKLEKIVVNCGLGAEA GNSKGLDAAMKDLAMITGQWPVKTKARKSVASFKIREGNTIGIAVTLRGR(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |