Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d027333_circ_g.3 |
ID in PlantcircBase | zma_circ_006345 |
Alias | Zm01circ00004 |
Organism | Zea mays |
Position | chr1: 3107011-3116066 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d027333 |
Parent gene annotation |
AP-2 complex subunit alpha-2 |
Parent gene strand | + |
Alternative splicing | Zm00001d027333_circ_g.1 Zm00001d027333_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d027333_T011:11 Zm00001d027333_T009:12 Zm00001d027333_T010:11 Zm00001d027333_T026:11 Zm00001d027333_T016:11 Zm00001d027333_T027:9 Zm00001d027333_T002:11 Zm00001d027333_T004:11 Zm00001d027333_T017:11 Zm00001d027333_T015:11 Zm00001d027333_T038:4 Zm00001d027333_T028:11 Zm00001d027333_T029:10 Zm00001d027333_T014:11 Zm00001d027333_T022:11 Zm00001d027333_T030:10 Zm00001d027333_T006:11 Zm00001d027333_T035:7 Zm00001d027333_T037:7 Zm00001d027333_T019:12 Zm00001d027333_T025:10 Zm00001d027333_T008:11 Zm00001d027333_T005:11 Zm00001d027333_T013:10 Zm00001d027333_T032:11 Zm00001d027333_T021:11 Zm00001d027333_T020:11 Zm00001d027333_T012:10 Zm00001d027333_T018:11 Zm00001d027333_T024:11 Zm00001d027333_T007:11 Zm00001d027333_T001:13 Zm00001d027333_T003:10 Zm00001d027333_T023:11 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.104454845 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
3107051-3107110(+) 3107392-3116061(-) |
Potential amino acid sequence |
MLYIYMLGYDVDFGHMETVSLISAPKYPEKQVGYIVTSCLLNENNDFLRMVINTVRNDIIGRNE TFQCLALTMVGNIGGKEFSESLAPDVQKLLISSSCRPVVRKKAALCLLRLYRKNPDVVNIDGWA DRMAQLLDERDLGVLTSVTSLFVSLVSNNVEAYWNCLPKCVRILERLARNQDIPQEYTYYGIPS PWLQVKTMRALQYFPTIEDPNARRALFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLD AEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLLVTDVQDIIKRHQAQIITSLKDPDISIR RRALDLLYGMCDVTNAKEIVEELLQYLDTAEFAMREELSLKAAILAEKFAPQLLWAYHHTRRKN MYGKCFTFICWVMMLILGIWKLSR*(+) MLSTGRSHFVRLCHSLLYLLPFLRNHYSHSVSKMSQYTQPASQDTLVQISTRQFPYAQNQHHNP AYKCKAFSIHIFSSRMVISPQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Han et al., 2020 |