Detail information of Zm00001d027392_circ_g.8


General Information
CircRNA Name Zm00001d027392_circ_g.8
ID in PlantcircBase zma_circ_006361
Alias zma_circ_0000636
Organism Zea mays
Position chr1: 4252855-4256569  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d027392
Parent gene annotation Callose synthase 9
Parent gene strand +
Alternative splicing Zm00001d027392_circ_g.3 Zm00001d027392_circ_g.4 Zm00001d027392_circ_g.5 Zm00001d027392_circ_g.6 Zm00001d027392_circ_g.7 Zm00001d027392_circ_g.9 Zm00001d027392_circ_g.10
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d027392_T046:5
Zm00001d027392_T060:5
Zm00001d027392_T054:5
Zm00001d027392_T049:5
Zm00001d027392_T003:5
Zm00001d027392_T033:5
Zm00001d027392_T041:5
Zm00001d027392_T027:5
Zm00001d027392_T059:5
Zm00001d027392_T015:5
Zm00001d027392_T029:5
Zm00001d027392_T023:5
Zm00001d027392_T019:5
Zm00001d027392_T055:5
Zm00001d027392_T007:5
Zm00001d027392_T051:5
Zm00001d027392_T030:5
Zm00001d027392_T025:5
Zm00001d027392_T002:5
Zm00001d027392_T068:3
Zm00001d027392_T062:5
Zm00001d027392_T056:5
Zm00001d027392_T020:5
Zm00001d027392_T045:5
Zm00001d027392_T034:5
Zm00001d027392_T052:5
Zm00001d027392_T012:5
Zm00001d027392_T050:5
Zm00001d027392_T065:5
Zm00001d027392_T016:5
Zm00001d027392_T064:5
Zm00001d027392_T042:5
Zm00001d027392_T036:5
Zm00001d027392_T069:3
Zm00001d027392_T070:3
Zm00001d027392_T004:5
Zm00001d027392_T067:5
Zm00001d027392_T038:5
Zm00001d027392_T006:5
Zm00001d027392_T011:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATATCGAAGGATGAATACATGCAATATGCTGTTGTAGAGTCCTTCCATAGCATTTATCATAT
TCTGACGTCTATACTAGAGAAAGAAGGCCGCCTCTGattagtactgtcgaggctgttcacagat
tctttgagaagtttcctggagcattcatgcatagacttcatgttgaggttcccaaaaggtttct
gatgtcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 452
Transcript exons: 4252855-4252940,4253018-4253042,4256036-4256130,4256215-
4256299,4256409-4256569
ATTAGTACTGTCGAGGCTGTTCACAGATTCTTTGAGAAGTTTCCTGGAGCATTCATGCATAGAC
TTCATGTTGAGGTTCCCAAAAGGAAGCAACTGCTATCTTCTGGTCAGGAAATAGAGTTAAACAA
GTTTGACGCATCTAGATTCTCCCCCTTCTGGAATGAAATAGTGAGGAATTTAAGGGAAGAGGAT
TATATTAATAATTTTGAACTAGAATTGCTTTTGATGCCCAAGAATGACGTTGGAGTTCTACCGA
TTGTGCAATGGCCAGTTTTCTTGCTTGCTAGCAAGGTTTTCTTGGCCAAAGAGATTGCAGAGGA
CTGCAAAGACTCACAAGAAGAACTTTGGTTAAGGATATCGAAGGATGAATACATGCAATATGCT
GTTGTAGAGTCCTTCCATAGCATTTATCATATTCTGACGTCTATACTAGAGAAAGAAGGCCGCC
TCTG

Genomic sequence ATTAGTACTGTCGAGGCTGTTCACAGATTCTTTGAGAAGTTTCCTGGAGCATTCATGCATAGAC
TTCATGTTGAGGTTCCCAAAAGGTTTCTGATGTCCTCCTAGCTTCTTGTTTATCTTCTTTGCTT
TCATTCTCTAAATCTGGTTTTAATCTTTTATACAGGAAGCAACTGCTATCTTCTGGTCAGGTAT
GCGTTATTATTGTTATGAAACTTATCCGTATATTGATTTTAAAGTCTGAGTAGCTGTACATTTT
GATCCTGTTTTTTTCGATCTCTAGGATCTGCGATATACACAATTCTCGTTTGAATTATTACTAT
ATGTATATATAACTAGTTAGATGCCCGTGCGTTGCTACGGTTTTCATATATCACATATAGGGGT
GGCAATAAGCTCTAAATTTTACACTAGGACCAGATCATATTAGGATCAAGCTCTATTTTTATTT
TCATTTTTGAACTAAAATTAATTAAGGGCTCAAACGAATCGTCAAGAAACATTTGAATCATGAT
CCATTACCACCCCTAATCACATAAATAGACATTTTTTAAATGAGATAGTTGTTTAAATCATGGT
TATTAAGGCATCGCTTTAGCGTCGGTAAGGCGGACGCGGAGGCGTAAGGCGTCCTCTCGCGTGC
AAGAGTAAGGCGTGGCCGCGCCGGGGAGAAGAGGCGGTCAAGTGGTGGCAGGGCGCGACGGCGG
CGCGGCGCGCAGCGTGTTGGTCACAACAGCGCACAGGGAGGGGAGCTGCGGGGAGGGGAGAGGG
AGGAGATGGTTCTTCGGGATGGGGAGCCAGCGAGCCGCTGACGCCGGGGTTGAGCCTGCGTGAC
GAGCGCGAGTGGAGGGAGCGGAAGATCTGCTGTGAGCAAGATGAAGGCAGCGGCTGCTATCTGC
CTTCGCTGGTACGCTGGAGCTGTGAGAAGGTTAGGGTTTTGAGCCTCGGTGGGGTACTAGGGTG
GATGCTGAATTAAATGGGCTTCTAGATGGGCCATGAAATAGAAGACCATATTATTCTTTTTTTC
TTTCCTTTTCCATTTCCTTTTTCTTTATAACATTTTTTTGACACATTATAGTTCAATGAATATT
GGAATTTTTGAGTTCTGTACTGGGATATATTATGTGTTAGAGACCTATTAGTGGTTAGGACCTA
ACTTTATGTGCATATATATATAATATTGTATATTTCTATCTATTTGAGACTATATTTGCATATT
TCCTATTCTCATTTTCTAATTTTATACATTACTAAGGCGTCGCCTCGCCTTACGCTTTAACGCT
TAAGAGGTAAAAAGGGGGTCGGTCGCCTTACCGCCTTAATAACTATGGTCTAAACATTTCCAAA
TCTTTATAATAATACTAACCATGAAGATAAGTCGACATATTTTAGTTGCAATCGTTTGAATACT
AAGTCAAATGTAAAATAATAAAGAACTCACACCTGTTCGTACGTAAAAATTACAAACAAATTTC
ACATTATCACTGCTTTAAATGTGAGAAATTATATCATACTAAAACAGAAATATATATATTTTTG
GTAATCAAGCTGTACCTTTTTAGTGACAACGCTGCCATTGCACAAACATTTTTAGCAATCAATT
TAAGTGGGTAGCTCAGGGCCCTCCTTACTATTTGAGCTCCCACCTAATGTCAGTTCAACATGTC
AGCTATAGTTGAACCGATAAGGCTATGGCCAGCAGACCATGCATATGGCCGTGCAAAACACTGT
TTTGCGCTGCAGACTTCACTGCTTATAAAGTATAGTTTGAAATGGGAGAGGAGATGAGAAGCTG
GTTTATGAAAAAAACTGGTTGATGGTGTTTGGAAACCGGTTTCTAAGAAACCAGTTTCTAGATT
TTTGAATATATAATGACTAGCCTACCCTTCCTCTATTCTAAAAAGCGGTGTCAATAGATGTAAA
TTACATGAAATCAACAAGGACATGACGTAACTAAACAGACAAAAGCTGGTTTTTAAGAATTTGG
GAATCCAATTTCTATAAACCGGAGAATAAACTTGTATATTTGCAACCACCTCTGTTTTCATAAA
CCAATTTCTTAAAAACGGAGTGCTTCTAAACAGGTCCTGAGTAAGGCTGCTGGAGATGTCCTTT
TTTTTCTCGAACTCGCAATAGGATTATGTCATATTAATAAGACAAAAAGGGTACAAAAACAGGG
GGTAAACCCAGCAACCCCCTAGGAACTAATATCCTAACAAGATTGTGCTCTGTTGCCTCCACTT
TCAAATGAAATAAGGGATTACAGATTTTGTTTTCACCTTCTGCTCATCGTTCTCCATTGTATCC
TTGATGATTACATTTTTTTGCAAGGCAAGATGACCTTTCATATTTCTTCTGTAACATGCATACA
ATCAACGCCAGTTAATTCTATCATAAACTGTTTCATAAATCCATCAACTCTTCTCTTATTCTGA
TCACACCAATAAAAAATTCATGAGCTGCATGGTACTTCTTAATTATGAGATAAACCTCCTTTAA
TAAAAGCTGCCATGTTTGAGGAAACAAACCCCTATCAGCATATGTAATAGGAACGTGGGAGAGT
GATGACTAATTTTCGGTCAAGTAGCGAAGTTCATAACCAAGTGCAGTAAAAAAGTATTATATCC
TCTGTCGGTAACCACTGGGATAGAGAAACAACAACAGACCGAGCAAAACAGACAGTAGTTCAAT
CTTCAATGTCTAGACTCTAGAGTGAGACATACATGGCATAGATATGGGAGGGAGCAGGGTGGGC
TCTCACCGCTGATTCATGCCGACAGGTGGCGTCGGCAAACGAGACTCCCGGGATGTCCTAGCAG
GCGGCTTGCGACCCCAGGGCGGATGCCGCGTACTGTAGCTCATGGCACGATGATGGATTTGATC
CCTGCTGCGGGCAAGAGCATGGATCTGGGAAGAGGAGGGAGAGAAGCGGCGGCACCTATGAGAG
CAATCGCCGGTACTGACGCCGAATAGGGTTGTGGGAGATGGGAGGGAGCTGAGTTGGGGAGGCC
TTGGACTGCGGGTTAATTACGAATAAACATAAGTTTTTTTTTGCAAAAGTGCTACAATCATGTG
GGAGGACACATGGAGAAACGCGTGCTTTATATTCGTAGAGATAGAGATGTGTGCCATTCTTTAT
TGTTATTTACATAGAGTTTGACACTGGAGGCATCAAATTTTCCAGGAAATAGAGTTAAACAAGT
TTGACGCATCTAGATTCTCCCCCTTCTGGAATGAAATAGTGAGGAATTTAAGGGAAGAGGATTA
TATTAATAATTTGTAAGTATTGCTTCCTATGTTACTATGGCGCAGTTCTCCTGATTGCCATATG
TCAATATGGTTTGACTACTATCCTACTTGCAGTGAACTAGAATTGCTTTTGATGCCCAAGAATG
ACGTTGGAGTTCTACCGATTGTGCAATGGCCAGTTTTCTTGCTTGCTAGCAAGGTAAAAAATCG
AAAACAACTTTAACTGTTTAAAAGTTTTGCTTGCTTGATTCACAACTTTTGTTTCCATTTTGTT
TCCTCAATCAACACCACCCCTTTCCAATTTGTAGGTTTTCTTGGCCAAAGAGATTGCAGAGGAC
TGCAAAGACTCACAAGAAGAACTTTGGTTAAGGATATCGAAGGATGAATACATGCAATATGCTG
TTGTAGAGTCCTTCCATAGCATTTATCATATTCTGACGTCTATACTAGAGAAAGAAGGCCGCCT
CTG
Conservation Information
Conserved circRNAs NA
PMCS 0.059822265
Functional Information
Coding potential Y
Potential coding position 4252925-4256530(-)
Potential amino acid sequence MKSMHECSRKLLKESVNSLDSTNQRRPSFSSIDVRI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b