Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_000407
Alias 1:762510-767266
Organism Arabidpsis thaliana
Position chr1: 762510-767266  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT1G03160_circ_g.1 AT1G03160_circ_g.3 AT1G03160_circ_g.4 AT1G03160_circ_g.5 AT1G03160_circ_g.6 1_circ_igg.7 1_circ_ig.1
Support reads 1/1
Tissues seedling;flower
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAATCTAAAACCAAAAAGGGGGAAAACACACGGAAACACAGCGATTGGCGAATGCGAAATTC
GGATGGTCAGGGCTCACTAGAGAGAGAGAAAATAAGatggaggaagtctcccttctaattgatg
ctgtttctcggatcgatgagccgtttctgatggttatagtggtaattctgcactcaactccgtc
aaattgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGGAGGAAGTCTCCCTTCTAATTGATGCTGTTTCTCGGATCGATGAGCCGTTTCTGATGGTTA
TAGTGGTAATTCTGCACTCAACTCCGTCAAATTGTGATTCCAGGAATTTGCATTGGTATTAGCT
CTATATTCATTCCAGAAACATTTTAGTTACACACTTTTGCCAGCACTAGATAGCTTGAGATACA
ATGGGCATGCTTCTAGTCACTTGTCCTTTAGTGCTTCTCAATATCTTCTTTCGTCGCCTATGAC
TATGATGTTTCGCTTCTTCTTTTGTTCTGTCTATGCTTCTCTTCTTAATTTGCTTATGGATCTG
GTTGTAAGGGAACTGCATATTTCTTAACTGTACCATCTGCTTGTGTACATAGTTTTTTCGCTTT
CTTGTGACTTGTGAGTATGCCGTTCTTGGAAGATGTTTTAAGTGGGACAAGTTGCCTTTATGAT
TCAAAATAGTTTTTGTATGGATAATTAATTGGAATCCACAATTTGCTGGTACTAGGGGGAATTT
AACTCTGGAAAATCAACGGTTATCAATGCACTTCTTGGGAAGAGATACCTGAAAGAAGGGGTAG
TCCCCACTACCAATGAAATCACGTTTCTGTGCTACTCTGACTTGGAATCCGAAGAGCAACAACG
TTGCCAAACACATCCAGATGGCCAATATGTATGCTATCTTCCTGCACCAATACTTAAGGATGTG
AGTAATTCAAAATTCTACCATCGCAGTCCTGAATTTTTACTAATTATTTGGAGGAATTGATTTG
GGTTGTTCTCCTTTCGAGCAGATAAATATTGTTGACACACCTGGGACCAATGTGATCCTTCAAA
GGCAACAGCGTCTTACAGAAGAATTTGTTCCACGTGCAGATTTGCTTGTTTTTGTTCTTTCTGC
TGACCGCCCTTTAACTGAAAGTGAGGTAGAAGTTACCGTTTTACTTGGCATGTTAGTTGTTGTT
GTTTTTGCTCAATATGTATCTGCCTAAGTAGCTTGTTAGATCTATTTTTCACGAAAGTAGTTAG
TTAAGTCATGTATAGACCATCAAGACCTTGTGTAGGGAAGGGAAAGTTGTCACTAGGTTGAATG
CATATATCAAGGTTTTGTTGATTATAAATTTAAACTAGACTAATTTATTTTCAAAGTAATGAGT
GTTATAGCTATTGCTGGAACCAGTATGTCCTGTTGGTCCATATTTTGGTAAAGCTTAGGCCAAT
ACATTTGAGAGGTGAGTTGTTATTGGTACAGCAAAACTGATTTTACGTCCATGGCAAATTGTAT
GTAAATGATCATCTACGAAGTACTAACCTTATGAATATTTGGTTCTTATTTTGAAAATCTGAAA
AAGTTTCAAAAGAAGGAATAAGCTTCTCAATGTCATCATACCCATGTCATTTCTATCTCTACCT
CTGGAGCTTCCTGCTGTCTTGATTTTACTGTAGGCTGATTTACATCTCATTGCGTTTGTCAGGT
TGCGTTTCTCCGGTACACACAGCAGTGGAAAAAGAAATTTGTGTTTATTCTGAATAAATCTGAT
ATCTATCGTGATGCTCGTGAGGTTTATCAGAAACAATATTTATGTCTTTTCCTTGATAGTCTCT
GTAATTGCTGGATTTTTCTTGACTAAAGATTAATTTTACTGCTGCAGCTTGAGGAAGCTATTTC
ATTTGTTAAAGAGAATACACGGAAGTTGCTTAATACAGAAAATGTGATATTGTATCCGGTGTCC
GCACGGTCTGCTCTTGAGGCGAAGCTTTCAACAGCTTCTTTGGTTGGCAGAGATGATCTTGAGA
TCGCAGATCCTGGTTCTAATTGGAGAGTCCAGAGCTTCAATGAACTTGAGAAATTTCTTTATAG
CTTCTTGGATAGCTCAACAGCTACCGGGATGGAGAGAATAAGGCTTAAATTGGAGACACCCATG
GCGATTGCTGAGCGTCTCCTTTCTTCTGTGGAAGCTCTTGTGAGACAAGATTGCCTAGCTGCTA
GGGAAGACTTGGCTTCAGCAGACAAGATTATCAGTCGAACTAAAGAATACGCGCTTAAGATGGA
ATATGAGAGCATTTCTTGGAGAAGGCAGGCTCTCTCGTTGGTATAAATTCTATTAGATATTATC
TTGTTGAATCACGAAGGAGGAAATTGGATTGTTCTAACTTGGCTTTTTTGTGTTTTGTACTCTG
GCTTTTATCGCAGATTGATAATGCCAGATTACAAGTTGTTGATCTGATAGGAACTACCCTGCGA
CTATCAAGCCTTGATCTTGCGATCTCGTACGTGTTCAAAGGGGAAAAATCGGCCTCAGTAGCAG
CTACATCCAAAGTTCAAGGTGAAATACTCGCTCCAGCACTCACAAATGCGAAAGTAAGTGTGAT
GCTTTATTCTTTGAGTATTGGCCTAACTGGGGACATGTTGGTCATATATATGAGGTCTGAGATA
TAGTCACTATTCATGCAGAAAGTAAATATTGTCTAACAATGTCTTGTTGTGACCTGATTGACTT
TACATTTCACTGTTTGCAGGAATTGCTTGGAAAATATGCTGAATGGCTACAATCAAATACTGCC
CGTGAAGGGAGTCTGTCTCTGAAATCATTCGAAAACAAATGGCCAACATATGTCAATTCAAAAA
CGCAATTGGGCATAGACACATATGACTTACTTCAGAAAACTGATAAAGTCAGCTTGAAAACAAT
ACAGAACTTGAGTGCCGGAACCACATCAAAACGATTGGAACAAGATATTCGAGAAGTGGTGAGC
TTCAAGTATTAAATACTTTTAGTCTAAGTTCTAACTAGAATTCAGTCGATTAAAGTGTCTTGAT
CTTCATCATTGTTTAATTGTGTCATCTGTTCAATCCGAACCTATGATCTGACGGAGATGTTAAT
TCAGTACCGTATTTTCCCAGATACTTCGTCTCGCTATTCAAGAATCAATCTAAGTGACACTTTT
GACATAGTTGAGTTTTGCTTGCCTTTTCTAGTTCTTTGTGACAGTTGGTGGGCTTGGAGCTGCA
GGACTGTCTGCATCACTTCTAACCTCAGTGCTACCGACCACACTGGAAGATCTTCTTGCTCTTG
GCCTTTGCTCCGCTGGAGGGTAATAACACTGCTCTAAATTTCCCCTCTTCCCAATGTCTCATTA
CTCCACCTTCTTAGATCACGCCTAGTGTATTTTTTTCTTGCAACTAGAGGCATATTTATGACTT
TTAAGAAAGACTGGTTGTATGCATAACATAATCTATGTGACAGGTATGTGGCTATAGCAAACTT
CCCATATCGAAGACAGGCTATAATTGGTAAGGTGAATAAAGTGGCTGATGCGTTGGCTCAACAG
CTCGAAGACGCTATGCAAAAAGATCTTTCAGATGCGACGAGTAATCTAGTTAACTTTGTGAATA
TTGTTGCCAAGCCTTATCGAGAAGAAGCTCAGCTAAGACTTGATCGTCTTTTAGGAATCCAGAA
AGAATTATCAGATATTAGAAGTAAATTACAGTTGCTACAAGTTGATATTGATAACCTTCATGTA
TCACGAGACGAGATGAGACTTTAGCTATTCCAACACAATGTCGGGTTTTCCCTTCTTGACATTG
TTCAGTGGGGGGCAAGTGTATGTACTTTGTCATAATGAATAATACCTGCCAGTTCCGACTTGAA
ATGGACTCACTGATGGTTTTTTTGAATGCGAATTCAAAAGATTGGGGAGGTTCTTGAAAGAACC
AAACAATAGCATTATGGGCGTGAAACTTTGGTATAACGTTTTTTAGCTTCTTTTTCAGATTGTT
TGTGATACAAATCGCTGGATGAGTTGGAAGCTCAAGAGACTCATGGAGAAAATTTTCTTCTGAT
CTTTGACCTGCACATGTACCTCATATCACAGGTAAATATGTTAGTTGACTCATTTTTTCTGTCA
ATTGGATTTTATGGTCTCCTAGAGTTCATGAATTGCTTGATACATTCATATGAAATTGATTCTC
CGCATAGAGCATCTAAACTTAGTTGTCAATGTACTAATCTTTTGACTTTAGTGGCTTAAATATG
AGGGAAAAAAACAATCTTAGTATAAGTTTCCATGGAGAGTAATTCTCAGCATATGCTAGCTGTG
ATTTCTAAAGATAAAACGCTTGAATTTCTTTTTTAGTTAAGGATTGGTTCGAGAAGTTTTAAAA
ATCCAGAGGTGCTAGAATAAACCTTGTTAATGCTTGATACTGGAGATTGTTTAGAATTAACGTT
AGAAGTCTAACACTGTATAAAAGCTTGCCATATGGTCCTCCTAAGTTTTCTAAACAAAGTCATA
GCTTTAAGCTAATGACATATATGCTTGATAACCAAACCTTTTATTTTATTAAAAACAAAGAGAG
AATATTAAGTATGGACCATACTGTATGGTCAAAAGTTAGGGAAAGAGAAAATCTCCAGTTGACA
TGTTTTTGTGTAAACGTGAAACAGATTCCACCTTCCTTTGTTGCTAAAGATCAGAAAGAAACAT
AGACTTCCAAAATAATATTAAAAATTGCGAAAATTTCGAAAACAAAAAGGAAAATTTGAAGGGA
TCTAGCTTTGGATTGTCCTTTTCAGTTGGGGACCAGAAGTGGAATGATGATGCAGAGAAAGCCC
ACTTTTTTTGGTTCTTGTTTCCAGGTTTCTCTTGTTCTGATTGGTTTAGGCAAATCTAAAACCA
AAAAGGGGGAAAACACACGGAAACACAGCGATTGGCGAATGCGAAATTCGGATGGTCAGGGCTC
ACTAGAGAGAGAGAAAATAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.231674566
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020