Detail information of Csa1G590280_circ_g.1


General Information
CircRNA Name Csa1G590280_circ_g.1
ID in PlantcircBase csa_circ_000534
Alias Chr1:22420905_22424091
Organism Cucumis sativus
Position chrChr1: 22420905-22424091  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa1G590280
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa1G590280.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCTATTGAAGAAGCACCTCCAGTTGTCAAGGAAACTCCAGTTTTTGTCGAGGATACTGAAAAA
ATCAATTCCTTAATGGCTGAGGTGGAAAGTCTGAAGggtgtcctcgaagcaattaggatcagct
gtgctggatatccaaccagaagaacattttatgagttcctcctacgttttggggttcttgcacc
agaagttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGTCCTCGAAGCAATTAGGATCAGCTGTGCTGGATATCCAACCAGAAGAACATTTTATGAGT
TCCTCCTACGTTTTGGGGTTCTTGCACCAGAAGTTCTGGATGGAAAGTAAGTTAACTTACTGCC
CTATGAAACATATTTCTCTCTTAACAAAATTATAGAAAAATGAGGGGTTGAAATAGGAGAGGTG
AGACAAGTTTAAGTATTCTTTGTGTCCTGACAGTCTGATATTACTACCATATGTGCAGCTATGA
TGACAAGGTAGCCTGCCAGATGATCCTGGATAAAATGGGTCTGAAAGGTTATCAGGTGATTTCA
TTGTTGCTGTAAACTTGTATTTTTTAAGGTCCCTTGGCCATTGCTCTGGTTGGATTTGAAACCC
ATATCTCCAACACTACACCACACCTCCATACCTTTTATGAGATTACTTCTTGAAATCCAATGGG
ATCGATAGATTGAAGCAGTTGATTCAAATTATTTTGATAACCACAAATGCACACATCTTTTGCT
TATTTCAAATCATTGCTTCATTAATCAATTCCTCTTGCTACAGCTGTTATGAGTTTTGGTTGGG
TGATTGCCAAGTGGGGTTTGTTAATGTGCAGTACAGAAAACCTCATTCTTGTATTGTGTTTAAC
ATTACATACTTTTTCTCAAACTTTGAGTCTAATGTCTTAAGGTCCCAGATGCCTTCATTGGCAT
GGATATCCAAGTACTCAATTCTTTTGGCATTGATGATTGTACTTGTTTGAGACTCAAGATCTCA
CTTGAAAGCTCCTAAGTGCTTTCTAGTTTCTGAAGGTTTTGCGTATCTCCAAGATTAATTTATT
GGTTAACTTGGTTGGGCAGATTGGTAAGACAAAAATATTCCTGAGGGCTGGGCAGATGGCTTCT
CTGGATGCAAAGAGAACAGAGGTGCTTAGCAATGCTGCCAGAACTATTCAAATGCAAATTAGAA
CGTTTATTGCACGCAAGGAGTTTGTTGCATTACGTAAAGCTGCTATACATGTGCAATCATTTTC
TCGAGGTACTTTCTTGGACTGTCTCAGAAATACCGCATGCTCATTTCTTCTTAGTCTTTTTTCA
TTTTAAAAATATTCTTTAACATAGCAAGAAATCATGAAATTTTTATGAGTTCGTCGAGACTGAA
GAAACTTTTGGCTTACATCATCAATGGTCTCGGAATCTCGTGTTGTTATTTTTATAAATTGTTT
GATCACTTGTTACCTGTGTTCCTGGAAGTATGCCTATTGCGGTTGTCTGGAGTCTTAAGATATC
TATTTTGGGATGTGATTGGGTTCTTCTTCACATTGTTTTGTATTATTTTGATTTTTTGTTTTTG
TGTTGTGAGAAATGAGAGTCCGGATCACTTTTTGGTTAATTGCTCTTCTTCCGGAAGCTCTTGG
GAGAAACTCTTGTTGATCTTCTGCCTTAGTTCATGATGCCTTCCTTTTCTGACAAGTTCTTTCA
GATTGACCTCACTTTATCCACGAAGAACTGTTATTCTTCTGTGGCTGAATTCTTGCACGATGGT
AGGGGAAATGTTGAAGATGTTTGTGAGAAGGTGTTGATCCAATGTTCCTTGACGGGATGTTAAC
AATTATATTTTCTTCCCATTTGATAATTGTGGTTTAGGAGATGGTCCAATAGATCTCCAACAAT
TATCTAGCTATATATTTCATTGATATCTTGAAGTACGATACCAAAGAATATCATATTAAGAGAT
AATTACAAAAAACACCTCCACTGACTAGTAAGGGTGTTTAGATTATAATTACAAAGGGGAGGTA
ACTTGCTGCAAGTGATAGTAAAAAAGTGGATTCAATAAAGAAGTTGTTCCATTAAGATTATGAT
TATTAGTATACTTGTTTGTTTCCTACATAAAAAAAAGTTGCTTTATTATCTCAAAAGAAAAAAA
AGAAAAAGGAAAAAAAAGAAGTTGCCTTCTTCAATCTGAAAAAGTTATTTTTATCCCTCAATGT
AAACATTTATTAATCCTCTCGATCAATGGTTTAAGATTTATGAAGTTAGTTTTTTTCTCTTAAA
ACTCTAACGTGTGTTTGTTTCAAATTATAATTAGGTGTTTTGGCTCGAAAACTATTTGAGCAGT
TGCGACGGGAAGCAGCAGCTTTAAAGATCCAGAAGTGTTTCAAGAGATATATTGCCAGGAAATC
ATACTTAGATTTGCTCTCATCTGCAATCAAATTGCAAACAGGGTTAAGGGCAATGAAGGCTCGT
GATGAATTCAGATTCAGAAAGCGTACCAAGGCAGCAATTATCATTCAGGTGCTGTTTCTTGTTT
GTTTTAGAGTAATTATTTGAAAATATAAAATCTAAAACTTCTAAGATTTGTAATTGAGAACTAT
ATTCATTCTGCAACATTATGTTTATCAAATCAGTTTGTAGTACCTAGATGTTGATTGGATTCTG
ATTTCTTTTGGTTGACTTGCAGGCACGTTTGCGTTGTCACATGGCGCATTCTTACTATACGAGA
CTCCAAAAAGCTGCATTATACACACAGTGTGGTTGGAGGCGACGAGTTGCACGAAAGGAGCTAA
GAAAACTGAAAATGGTTCAAATACACCGTTTATTTTGACTTTGTTTTATATTTAGGACAATTTT
TGAATGAAAGAAAGTTGTGGGAGGAATAAATTAAGGCACTCATATATGCTTTCTATGCACTTAG
GCTGCAAGGGAAACTGGTGCACTCAAAGAAGCAAAAGACAAATTAGAAAAACGTGTAGAAGAAC
TCACATGGCGCTTACAACTTGAGAAGCGGCTGAGGGTATTTTCTTGATTACTTTCTTTCGTTCG
ATGTAATGTGTGGATCTGGGTTGGGCTGAGGGTATTTTCTTGATTACTTTCTTTCGTTCAATGT
AATGTGTGGATCTGGGTTGGGAAACAAAATGCTCTACATTGTTCTGCAGAAATTGATATATTTC
TTTTTCCCTGCTGAATTGTAGACTGATCTGGAAGAGGAGAAAGCCCAAGAAATTGCCAAATTAC
AAGATTCTTTACACAACATGCAATTACAAGTTGAAGAAGCAAATGCTCAAGTTATCAAAGAGCG
AGAGGCTGCTCAGAAAGCTATTGAAGAAGCACCTCCAGTTGTCAAGGAAACTCCAGTTTTTGTC
GAGGATACTGAAAAAATCAATTCCTTAATGGCTGAGGTGGAAAGTCTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.117285726
Functional Information
Coding potential Y
Potential coding position 22421181-22424088(+)
Potential amino acid sequence MILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAI
HVQSFSRGVLARKLFEQLRREAAALKIQKCFKRYIARKSYLDLLSSAIKLQTGLRAMKARDEFR
FRKRTKAAIIIQARLRCHMAHSYYTRLQKAALYTQCGWRRRVARKELRKLKMAARETGALKEAK
DKLEKRVEELTWRLQLEKRLRTDLEEEKAQEIAKLQDSLHNMQLQVEEANAQVIKEREAAQKAI
EEAPPVVKETPVFVEDTEKINSLMAEVESLKGVLEAIRISCAGYPTRRTFYEFLLRFGVLAPEV
LDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAARTIQMQIRTFIA
RKEFVALRKAAIHVQSFSRGVLARKLFEQLRREAAALKIQKCFKRYIARKSYLDLLSSAIKLQT
GLRAMKARDEFRFRKRTKAAIIIQARLRCHMAHSYYTRLQKAALYTQCGWRRRVARKELRKLKM
AARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEKAQEIAKLQDSLHNMQLQVEEANAQ
VIKEREAAQKAIEEAPPVVKETPVFVEDTEKINSLMAEVESLKGVLEAIRISCAGYPTRRTFYE
FLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASLDAKRTEVLSNAA
RTIQMQIRTFIARKEFVALRKAAIHVQSFSRGVLARKLFEQLRREAAALKIQKCFKRYIARKSY
LDLLSSAIKLQTGLRAMKARDEFRFRKRTKAAIIIQARLRCHMAHSYYTRLQKAALYTQCGWRR
RVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEKAQEIAKLQDSLH
NMQLQVEEANAQVIKEREAAQKAIEEAPPVVKETPVFVEDTEKINSLMAEVESLKGVLEAIRIS
CAGYPTRRTFYEFLLRFGVLAPEVLDGNYDDKVACQMILDKMGLKGYQIGKTKIFLRAGQMASL
DAKRTEVLSNAARTIQMQIRTFIARKEFVALRKAAIHVQSFSRGVLARKLFEQLRREAAALKIQ
KCFKRYIARKSYLDLLSSAIKLQTGLRAMKARDEFRFRKRTKAAIIIQARLRCHMAHSYYTRLQ
KAALYTQCGWRRRVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEEEK
AQEIAKLQDSLHNMQLQVEEANAQVIKEREAAQKAIEEAPPVVKETPVFVEDTEKINSLMAEVE
SLK
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019