Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G03060_circ_g.3 |
ID in PlantcircBase | ath_circ_000376 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 724681-725081 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G03060 |
Parent gene annotation |
Protein SPIRRIG |
Parent gene strand | - |
Alternative splicing | AT1G03060_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G03060.2:2 AT1G03060.1:2 AT1G03060.4:2 AT1G03060.3:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.313831789 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
725058-724683(-) |
Potential amino acid sequence |
MKALASNPSAAQSLIEDDSLESLFNMVANGSITVFSQYKEGLVPLHNIQLHRHAMQILGLLLVN DNGSTARYIRKHHLVEGSVVHIMKALASNPSAAQSLIEDDSLESLFNMVANGSITVFSQYKEGL VPLHNIQLHRHAMQILGLLLVNDNGSTARYIRKHHLVEGSVVHIMKALASNPSAAQSLIEDDSL ESLFNMVANGSITVFSQYKEGLVPLHNIQLHRHAMQILGLLLVNDNGSTARYIRKHHLVEGSVV HIMKALASNPSAAQSLIEDDSLESLFNMVANGSITVFSQYKEGLVPLHNIQLHRHAMQILGLLL VNDNGSTARYIRKHHL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |