Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d027392_circ_g.2 |
ID in PlantcircBase | zma_circ_006355 |
Alias | Zm01circ00008 |
Organism | Zea mays |
Position | chr1: 4236075-4238251 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d027392 |
Parent gene annotation |
Callose synthase 9 |
Parent gene strand | + |
Alternative splicing | Zm00001d027392_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d027392_T054:5 Zm00001d027392_T004:6 Zm00001d027392_T051:6 Zm00001d027392_T011:6 Zm00001d027392_T060:4 Zm00001d027392_T059:4 Zm00001d027392_T046:6 Zm00001d027392_T062:2 Zm00001d027392_T029:6 Zm00001d027392_T042:6 Zm00001d027392_T003:6 Zm00001d027392_T052:6 Zm00001d027392_T020:6 Zm00001d027392_T049:6 Zm00001d027392_T025:6 Zm00001d027392_T030:6 Zm00001d027392_T056:4 Zm00001d027392_T012:6 Zm00001d027392_T033:6 Zm00001d027392_T045:6 Zm00001d027392_T055:5 Zm00001d027392_T019:6 Zm00001d027392_T050:6 Zm00001d027392_T027:6 Zm00001d027392_T034:6 Zm00001d027392_T006:6 Zm00001d027392_T041:6 Zm00001d027392_T016:6 Zm00001d027392_T023:6 Zm00001d027392_T015:6 Zm00001d027392_T036:6 Zm00001d027392_T002:6 Zm00001d027392_T064:2 Zm00001d027392_T007:6 Zm00001d027392_T038:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.025420774 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4236855-4236075(+) 4238199-4236075(+) 4236174-4238220(-) |
Potential amino acid sequence |
MFLIMMFQGLTIIAFNDGSFDRKTILQLLSLGPTYVVMKFIESLLDILMMYGAYSTSRGSAITR VAWRFCWFTIASVAICYLYI*(+) MAILLVYYSFSCNLLPIYLARELGVILQKQTAEPAESCNSGGGVSFLDNVIYPFYEIIAAEAAN NKNGRAPHSEWRNYDDFNEFFWSHKCFHLRWPWNLSDPFFSKPSRKYKGLLSRNHHYGKTSFVE HRTFLHLYHSFHRLWMFLIMMFQGLTIIAFNDGSFDRKTILQLLSLGPTYVVMKFIESLLDILM MYGAYSTSRGSAITRVAWRFCWFTIASVAICYLYI*(+) MTLSRNDTPPPELQLSAGSAVCFCRITPNSLARYIGSKLQLKL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |