Online Databases/Tools by Bioinplant Lab:
PlantcircBase: a database for plant circular RNAs. Chu et al., 2017, Molecular Plant
 
Local Software by Bioinplant Lab:
Scan_phasiRNA: a program to find loci with 21nt phased siRNAs (such as ta-siRNA gene TAS) using the Howell algorithm (Download). Shen et al., 2009, Plant Systematics and Evolution
eTM_finder: a tool to predict eTMs (endogenous target mimics) of miRNAs in plants (Download). Ye et al., 2014, Frontiers in Plant Science
circseq-cup: a program to assemble full-length sequences of circular RNAs (Download). Ye et al., 2016, RNA Biology
PcircRNA-finder: a program to identify circular RNAs in plants (Download). Chen et al., 2016, Bioinformatics
circRNA_pocket: a tool to show genomic features of circRNAs (Download). Zhang et al., 2016, 已获得计算机软件著作权【Patent registration number:2017SR231288】
TOD-Bayes: A naïve Bayes algorithm for tissue origin diagnosis of synchronous multifocal tumors in the hepatobiliary and pancreatic system (Download). 2017, International Journal of Cancer
 
Other Public Bioinformatic Tools:
DNATOOL
TREEView
PCGENE
CLUSTALX
GENDOC32
PRIMER5
QTLMapper_V1.6
QTLNetwork 1.0
WinQTLCart (V2.0)
GenScan
Sequin
Antheprot
Rasmol
Swiss-PDBViewer
Chromos2.13
MEGA 5.05