Quick Tutorial
To help users getting started with RTRIP, here are a number of example use cases.
Search Varieties Retrieving detailed information on one or a class of rice accessions from the entire list
Search TE locus Extracting TE loci for a given chromosome region or TE characteristic (e.g. TE family, TE length)
All TEs
TE in Genes
Search Genotypes Finding presence / absence status of TE loci in the interested rice accessions
Presence/Absence matrix
Search by Varieties
Search by Genes
BLAST Determining whether your sequences encompass identified TE loci or not
Browse Visualizing the distribution of TE loci in the rice genome and their relationship with annotated genes
