Chromosome 9

ILP Name cDNA name Japanica accession number BAC clone name Japanica start Japanica end Length on Japanica Indica Scaffold Indica start Indica end Length on Indinca Difference between Japanica and Indica Genetic distance based on RFLP map Forward primer Reverse primer
RI05240 J023089O08 AP005787 P0501E09 35847bp 36819bp 972bp Scaffold000300 53643bp 54619bp 976bp -4bp 0.5cM CGGCAGAAAATTCAGGAAAA CAGCAGCTGATGCTTTATTTTG
RI05241 J013107E18 AP005787 P0501E09 87170bp 87377bp 207bp Scaffold009549 8956bp 9165bp 209bp -2bp 0.5cM TCTTCCATTTTTGGACAGAACA CGACCTTAACGGAAGTACAAGC
RI05064 002-137-E09 AP005560 OJ1178_D01 32491bp 32833bp 342bp Scaffold000791 12271bp 12612bp 341bp 1bp 0.8cM AATCATTGTCCAGCCGACTT TGGCTTTCATCTTCGGATTT
RI05065 001-046-F01 AP005560 OJ1178_D01 64139bp 64377bp 238bp Scaffold001343 24240bp 24474bp 234bp 4bp 0.8cM TGTTCGAATTGATGCACCT GGGACATCTCGAGGATCACA
RI05069 J013136G09 AP005563 OJ1227_D07 58522bp 59536bp 1014bp Scaffold000446 41400bp 42413bp 1013bp 1bp 0.8cM TTGCGGCACAACTCTATACAA CAGCAAGAGCTTGTTTTCCA
RI05070 001-018-G08 AP005569 OJ1310_F05 165bp 523bp 358bp Scaffold003971 18965bp 19324bp 359bp -1bp 0.8cM GAAGAAGCTGCGATGGCTAC AACATGCACCATGACTTCCA
RI05071 001-014-A04 AP005569 OJ1310_F05 49297bp 50396bp 1099bp Scaffold000566 28388bp 29486bp 1098bp 1bp 0.8cM CACCTGGTGTTCCTGGAGTT CTGTTGTCCTTGCTGAACCA
RI05072 J013116F07 AP005569 OJ1310_F05 51667bp 51891bp 224bp Scaffold000566 30757bp 30982bp 225bp -1bp 0.8cM CTAACCGTGACCCCAGCTT CAGAAGCATCTGTTGCAACTTT
RI05073 J013116F07 AP005569 OJ1310_F05 51875bp 52968bp 1093bp Scaffold000566 30966bp 32061bp 1095bp -2bp 0.8cM GTCTGCAGGGACGTCAACAC GCTGGGGTCACGGTTAGAAT
RI05074 001-037-H08 AP005569 OJ1310_F05 57133bp 57962bp 829bp Scaffold000566 47105bp 47933bp 828bp 1bp 0.8cM GAAGTGGACTGACTGGCACA ACTTTCACGAACCGCAAGAG
RI05075 J013058A15 AP005571 OJ1451_A02 14854bp 15042bp 188bp Scaffold000754 6582bp 6769bp 187bp 1bp 0.8cM CAATCCTCGAATTGGTCCAT GGTGACTGGTCCATGGTGA
RI05079 J033145I16 AP005576 OJ1610_C11 2976bp 4064bp 1088bp Scaffold005748 17845bp 18924bp 1079bp 9bp 0.8cM CTCCTCGACCGCTTCGAC GTGCCCATGAAGTGTGAAGA
RI05080 001-032-C03 AP005576 OJ1610_C11 55178bp 55573bp 395bp Scaffold003521 19662bp 20056bp 394bp 1bp 0.8cM GATGGTGGTCTGAAGAGCAAG TCAGATGTTGCCTGCCATAA
RI05081 J013067M21 AP005576 OJ1610_C11 90823bp 91721bp 898bp Scaffold002521 21467bp 22433bp 966bp -68bp 0.8cM TTGAAGTGATTGCTGCCAAG CCGTTTTACATGCCGAAGAT
RI05082 001-117-H03 AP005578 OJ1695_A02 22377bp 23344bp 967bp Scaffold002930 9731bp 10697bp 966bp 1bp 0.8cM TTTGGACTTGCTTGTCTGGA AAAGCTGCGGGTACATCCTA
RI05083 001-026-H12 AP005578 OJ1695_A02 26996bp 27282bp 286bp Scaffold002930 14796bp 15079bp 283bp 3bp 0.8cM GCATCAACCAAAACAAGCTC TTCAATCAAGTTCGGGTTCA
RI05084 001-026-H12 AP005578 OJ1695_A02 27312bp 27552bp 240bp Scaffold002930 15109bp 15348bp 239bp 1bp 0.8cM TCTTGATGCTCAGGGTAGGG TTTGCAAGGGAATCCAAGTC
RI05085 001-022-D03 AP005578 OJ1695_A02 33313bp 34158bp 845bp Scaffold002930 21141bp 21995bp 854bp -9bp 0.8cM ATCAGAGATGCTGCTGCAAA GGCCAGCAATGAAATAGCTT
RI05086 001-022-D03 AP005578 OJ1695_A02 36251bp 36872bp 621bp Scaffold002930 24088bp 24708bp 620bp 1bp 0.8cM GGAAAGTTTGCAGCCACAGT TCCAACAATTTCCCAAGAGC
RI05093 001-112-E10 AP005583 P0406E03 109458bp 109939bp 481bp Scaffold007899 10373bp 10853bp 480bp 1bp 0.8cM CAGATCGATTCCGCGATG GGAATCCACAAAGAAGCACTG
RI05094 001-038-E02 AP005583 P0406E03 18011bp 18971bp 960bp Scaffold002904 30545bp 31501bp 956bp 4bp 0.8cM CGGTTCAGAATTGCATCAAG CAGGTCAATATTCTGCCCAAA
RI05095 J033074A15 AP005583 P0406E03 70031bp 70965bp 934bp Scaffold001393 22786bp 23716bp 930bp 4bp 0.8cM TGGGACGTACATGTTCAGGA GATATGCTCATCCCCGAGAA
RI05096 J013001M12 AP005583 P0406E03 74455bp 75139bp 684bp Scaffold001393 27204bp 27886bp 682bp 2bp 0.8cM ACAACCATCGACTGAACGTC GCGGTAGCCATAACTTGAGG
RI05097 J013023L05 AP005585 P0448B11 100687bp 100982bp 295bp Scaffold006256 14405bp 14698bp 293bp 2bp 0.8cM GGGAATCTCAAGGGTCCTCT GCCCTCCTTCCTCCTCAC
RI05098 002-130-A02 AP005587 P0499G10 29680bp 30075bp 395bp Scaffold002698 22528bp 22911bp 383bp 12bp 0.8cM CACATCGTCACTGCTGCTTC CTGCAAATGCACGCTGAA
RI05099 J033096I21 AP005590 P0574F11 5740bp 6508bp 768bp Scaffold000376 56346bp 57108bp 762bp 6bp 0.8cM CTCTCCTCTCCGCCTAAACC TGCAACCCCAACAACACATA
RI05100 001-012-C10 AP005590 P0574F11 67672bp 67912bp 240bp Scaffold000692 24809bp 25051bp 242bp -2bp 0.8cM CCCGTTCATTTTACAAACACA TCCATGCTGAATGTCAGGTC
RI05101 001-031-C10 AP005590 P0574F11 7438bp 8254bp 816bp Scaffold000376 58038bp 58860bp 822bp -6bp 0.8cM TGCTTAAAGATGGCCTTTGG AATCTCCCATGCAAAAGCAC
RI05102 001-031-C10 AP005590 P0574F11 9996bp 10450bp 454bp Scaffold000376 60602bp 61055bp 453bp 1bp 0.8cM CGGCACTTGCCATACCTAAG GCATCCAAGAGGATGTCCTAA
RI05169 001-201-A08 AP005680 OJ1352_A10 47907bp 48759bp 852bp Scaffold005748 13309bp 14148bp 839bp 13bp 0.8cM GAAGGGCAGCTTTGTACCAT TCCCATTTTTCCATCCATGT
RI05202 J013088P06 AP005729 OSJNBa0069P02 42636bp 42982bp 346bp Scaffold000186 36964bp 37308bp 344bp 2bp 0.8cM TGGTGAGATGTTCCAAGCTG CAAGCTTGCGATATGGTTGA
RI05203 J013088P06 AP005729 OSJNBa0069P02 43987bp 45076bp 1089bp Scaffold000186 34868bp 35959bp 1091bp -2bp 0.8cM ATTTCGTGCACTCCCTTGAC ATATGGGGATCCCAGGACAT
RI05207 001-026-D08 AP005738 OSJNBb0066C12 131753bp 132280bp 527bp Scaffold001211 35744bp 36253bp 509bp 18bp 0.8cM GCGGATGCAATTCTGTTGAT TCGGTTATTGATGCCGATAAG
RI05208 001-026-D08 AP005738 OSJNBb0066C12 133294bp 133605bp 311bp Scaffold001211 34421bp 34730bp 309bp 2bp 0.8cM GTCCCTCTCTTCGACCTCCT GCGATGGAGTTGATGGACTT
RI05215 002-113-C01 AP005745 OSJNBa0017O03 20030bp 20876bp 846bp Scaffold012610 3700bp 4582bp 882bp -36bp 0.8cM CAGCCAACGGGATGAAGTTA GCGCTAGCGACAATGTTTC
RI05320 001-004-C07 AP005905 B1080A02 105205bp 105892bp 687bp Scaffold000376 37314bp 38004bp 690bp -3bp 0.8cM CCTAAACCCAGTTTGGAACG TGCCCCATTTTATCGTCGTA
RI05321 J013059I22 AP005905 B1080A02 11397bp 12097bp 700bp Scaffold008515 4585bp 5320bp 735bp -35bp 0.8cM AGAGCAGTGAGGCATTTGGT AAATCTCGGCGAAATCTGTC
RI05322 J013059I22 AP005905 B1080A02 13089bp 13357bp 268bp Scaffold008515 3326bp 3593bp 267bp 1bp 0.8cM CCTGATTGCATCTCGTTCAA CACCCATCATTCCAAAATCA
RI05323 J013059I22 AP005905 B1080A02 14827bp 15382bp 555bp Scaffold008515 1299bp 1856bp 557bp -2bp 0.8cM CCATCTCAATGCCCTACAGAA TACTCAATGTGACCCCAACG
RI05324 J013059I22 AP005905 B1080A02 15363bp 15734bp 371bp Scaffold008515 946bp 1318bp 372bp -1bp 0.8cM CGTTGGGGTCACATTGAGTA TCGAATTTGTCGAGTTTCTTCA
RI05266 J013126N07 AP005829 B1008E06 89771bp 90761bp 990bp Scaffold008273 8154bp 9147bp 993bp -3bp 2.1-2.4cM GCCTGCAGATGATCGTCAC GTAGAACGAAATCGCGTTGA
RI05317 J013044F03 AP005903 B1012G11 135747bp 136706bp 959bp Scaffold000534 38618bp 39578bp 960bp -1bp 2.1-2.4cM AGATCGACTTCCACCACCAC CCCGATAAAAGGTAGGCTCA
RI05318 J013044F03 AP005903 B1012G11 137218bp 137636bp 418bp Scaffold000534 37686bp 38106bp 420bp -2bp 2.1-2.4cM ATTCCATGGGTGGTTTTGTG GGTGCGTGATAACCCTGTCT
RI05209 J013149O20 AP005739 P0012A04 33815bp 34228bp 413bp Scaffold001275 19202bp 19620bp 418bp -5bp 2.4cM TTCAAGCCAAGAAAGGCAAG CAACGAGGCGGATGTCAC
RI05305 002-120-H08 AP005878 OSJNBb0012I09 68485bp 68750bp 265bp Scaffold004067 5811bp 6086bp 275bp -10bp 2.4-3.2cM AGAACGTCGACGAGAACCTC GCATCAGCTCCGACATCC
RI05103 J013149N22 AP005594 P0701E06 62613bp 63284bp 671bp Scaffold001803 19722bp 20395bp 673bp -2bp 3.2cM TCCCCTGGAGGTAGAGAAGG GCGTCTGCATAGTTTGCTTG
RI05104 J013149N22 AP005594 P0701E06 68206bp 68407bp 201bp Scaffold001803 25336bp 25534bp 198bp 3bp 3.2cM CTCTCTCCTCGTCGATCAGC TGCACCTGAAATCAAAACCA
RI05105 J033120G12 AP005594 P0701E06 8629bp 9312bp 683bp Scaffold006491 6238bp 6909bp 671bp 12bp 3.2cM TTGCTGCAGTTTCAGCATCT CAAGTGCTGCTTTTGCTGAG
RI05344 J033039N14 AP006528 P0651G05 19378bp 19883bp 505bp Scaffold001149 17192bp 17698bp 506bp -1bp 3.2cM GGAAGATGAGGAACTCCTTGAG CCTCGCTTACTCCACTCTGC
RI05345 J033030J06 AP006528 P0651G05 41589bp 41882bp 293bp Scaffold001006 8225bp 8517bp 292bp 1bp 3.2cM GATATTATGGCGGGTGGATG TTCACGCCACAGAATGGATA
RI05346 002-120-A05 AP006528 P0651G05 57771bp 58313bp 542bp Scaffold001006 24434bp 24972bp 538bp 4bp 3.2cM ATCCACCTGGCCCTAATCTT GTGCAAGCCTCCTCAGTGTC
RI05347 002-120-A05 AP006528 P0651G05 59156bp 59809bp 653bp Scaffold001006 25813bp 26471bp 658bp -5bp 3.2cM AGGCTAAGCCAGCTTGAACA TCCACCCATCTCCCATACTC
RI05348 002-120-A05 AP006528 P0651G05 59182bp 59844bp 662bp Scaffold001006 25839bp 26506bp 667bp -5bp 3.2cM TCACGTGGCAAGAGTACAGG CTGCCCTCAGCTGGAATATC
RI05349 J013091I09 AP006528 P0651G05 6171bp 6763bp 592bp Scaffold001149 30342bp 30935bp 593bp -1bp 3.2cM GGGAGCTGCTGATGTATTGG AGTTCCAAGAACAGCGGAAA
RI05350 J013091I09 AP006528 P0651G05 6900bp 7656bp 756bp Scaffold001149 29448bp 30205bp 757bp -1bp 3.2cM TTTGACTTGGCTGGAATCAA TTTGGATATGCCAACAATTCC
RI05351 J023066B13 AP006528 P0651G05 76269bp 77056bp 787bp Scaffold001006 41793bp 42581bp 788bp -1bp 3.2cM AGGGGTCTTTCTTTGGAGGA CATCATCCACCAGGCTTTG
RI05352 J023066B13 AP006528 P0651G05 77027bp 77795bp 768bp Scaffold001006 42552bp 43321bp 769bp -1bp 3.2cM CCAACGCCAAGACGAGTG CTCCCTCTTCTCCTCCAAAGA
RI05353 001-038-A04 AP006528 P0651G05 9601bp 10193bp 592bp Scaffold001149 26910bp 27504bp 594bp -2bp 3.2cM GAAGCTCTACGTCGGGAACA ATTGCAGCATTAGCCTCCTC
RI05066 J033052N08 AP005562 OJ1190_B07 84969bp 85633bp 664bp Scaffold000680 25010bp 25671bp 661bp 3bp 4.4-6.8cM TATTTGCCGTGCTCATCAAC TGCAGGAACACCTCTTGATTC
RI05067 J033052N08 AP005562 OJ1190_B07 85911bp 86103bp 192bp Scaffold000680 24539bp 24732bp 193bp -1bp 4.4-6.8cM ACGGCTCAGTGAATGTCTGG AGGCCTCCATGGACACTAAA
RI05068 J033052N08 AP005562 OJ1190_B07 86233bp 87107bp 874bp Scaffold000680 23536bp 24409bp 873bp 1bp 4.4-6.8cM GGTGACTGCCCAAAGACAAA TGCTCTCATGGTTTCCTCGT
RI05260 J023021A17 AP005818 OSJNBa0009H03 13433bp 13961bp 528bp Scaffold001357 27006bp 27278bp 272bp 256bp 4.4-6.8cM GTGGTGGAGATGGCCAAG TGACACGAGGAATGACCAGT
RI04351 J013129M17 AP004756 P0592C05 101418bp 102072bp 654bp Scaffold001934 22608bp 23249bp 641bp 13bp 10cM CAGTTCAGTGGCTGAAACCAT GTTCTCGATGCCCGATTCTA
RI04352 001-005-E09 AP004756 P0592C05 143886bp 144551bp 665bp Scaffold004412 13012bp 13678bp 666bp -1bp 10cM TTTCTGAGACTGGTGGCATTC TGACAATGCCACTTTTGATGA
RI04353 J013091K09 AP004756 P0592C05 85215bp 85591bp 376bp Scaffold001934 2778bp 3153bp 375bp 1bp 10cM GGAATTCCTGGTTTCCGAAT GCTCCTCCCGGGTAGTTTAT
RI04354 J023149F04 AP004756 P0592C05 93356bp 94145bp 789bp Scaffold001934 14522bp 15308bp 786bp 3bp 10cM CCTGGTGCAGGTCTTGTTTA TGCATGTTGGTCCTTCAAAA
RI04355 J013129M17 AP004756 P0592C05 96626bp 96904bp 278bp Scaffold001934 17766bp 18045bp 279bp -1bp 10cM CTTCCTCCCTCGGATCTCTC GTGAGCGAACCACCCTTCT
RI04356 J013129M17 AP004756 P0592C05 98805bp 99302bp 497bp Scaffold001934 19974bp 20492bp 518bp -21bp 10cM GCTGCTGAAGAAAAGGTTGG TAAGCTTGGCCAATGGTCTT
RI05174 J023105G21 AP005687 OSJNBa0019B22 19646bp 20308bp 662bp Scaffold006241 16105bp 16774bp 669bp -7bp 20.7cM CGCCTCCTCACTCACTCACT GGGTAGAGCAGGCGACATAA
RI05302 001-044-G02 AP005876 OSJNBa0092O08 111338bp 111699bp 361bp Scaffold005717 11373bp 11737bp 364bp -3bp 20.7cM CTGGCAGGATGTATTTGCAG GCTGTAGGAGTTTGCGGTGT
RI05303 J033107G06 AP005876 OSJNBa0092O08 117200bp 117490bp 290bp Scaffold005717 15194bp 15482bp 288bp 2bp 20.7cM TACCCACTTCCCCCACGA CTTCCTCCTCCTCCTCTTCC
RI05170 J033069E18 AP005684 OJ1742_G01 123389bp 124137bp 748bp Scaffold002237 28389bp 29181bp 792bp -44bp 26.7-30.6cM GCTTAATCTTCCAAAGAAAACCAA CGGCTCGTGAGGGTAAGTAG
RI05171 J033069E18 AP005684 OJ1742_G01 124083bp 124421bp 338bp Scaffold002237 28093bp 28443bp 350bp -12bp 26.7-30.6cM GGGTGGAGCTTTTGTTTTCA ACAGGCTTCCAGTCTTCACG
RI05172 J033069E18 AP005684 OJ1742_G01 124376bp 124814bp 438bp Scaffold002237 27696bp 28138bp 442bp -4bp 26.7-30.6cM ACGGAAATGTCTGCCTGAAT TCTGAACATTCCTCCGGAAC
RI05173 J013110E07 AP005684 OJ1742_G01 142697bp 142990bp 293bp Scaffold002237 8877bp 9156bp 279bp 14bp 26.7-30.6cM CCTGTACCACATGCTGCAAA CAGCACTACGAGCAATCACC
RI05306 J013110E07 AP005879 OSJNBb0024J13 114451bp 114807bp 356bp Scaffold002237 6805bp 7162bp 357bp -1bp 26.7-30.6cM CCAGATGAACGAACAAATGC AGCAGCACGTTCCAGAGAGA
RI05307 J023039K05 AP005879 OSJNBb0024J13 73222bp 73518bp 296bp Scaffold003099 26894bp 27191bp 297bp -1bp 26.7-30.6cM TCCTCTTCAGTGGGCAACTC CTAGACTCGCAGCAACCACA
RI05259 J013160H24 AP005811 P0706E03 28315bp 29406bp 1091bp Scaffold004223 26335bp 27424bp 1089bp 2bp 31.3cM GTGGGGCAGAAGGTGTACG AACACCGCATCTGGTCTGA
RI05185 J013057L06 AP005700 OSJNBb0085I16 30192bp 30974bp 782bp Scaffold009080 5407bp 6179bp 772bp 10bp 34.9cM TCTTGGTGGTTCTTGGTCTTC GCATGGATCAACGGAGAAGT
RI05186 J013057L06 AP005700 OSJNBb0085I16 31247bp 32252bp 1005bp Scaffold009080 6452bp 7459bp 1007bp -2bp 34.9cM GGAAGGGCAAAACTTCACTG GGCCCTGACAAATTGTTTCC
RI05187 J013057L06 AP005700 OSJNBb0085I16 34450bp 35055bp 605bp Scaffold009080 9657bp 10261bp 604bp 1bp 34.9cM TCACCTGAAATGAGCAGTTTG AGCAATGAAGCTCCTTTTGG
RI05188 J023101D09 AP005700 OSJNBb0085I16 85531bp 85797bp 266bp Scaffold000340 66269bp 66534bp 265bp 1bp 34.9cM CCAGACCGAAAGTCATCTCC AGCTCATCCTCCAGGACCTT
RI05189 002-152-F06 AP005700 OSJNBb0085I16 96673bp 97332bp 659bp Scaffold000340 54737bp 55393bp 656bp 3bp 34.9cM GGAGGGGTACCACGTCATC GCTTCAAGATGGGCATCAG
RI04907 J023039B22 AP005313 P0512H04 17115bp 18188bp 1073bp Scaffold000340 33105bp 34176bp 1071bp 2bp 35.2cM TGCAGTTCGAGGCTAGGTCT GATAGCCTTCCGGACATTGA
RI05005 001-127-F10 AP005508 P0711F01 4335bp 4617bp 282bp Scaffold001358 27526bp 27816bp 290bp -8bp 36cM CCAACTCCAACGCTTCCTT CGACAGGGAGTCATCAATCA
RI05076 J013134N07 AP005572 OJ1506_A04 33260bp 33797bp 537bp Scaffold001938 9259bp 9795bp 536bp 1bp 36cM CTGGTGCTGGAGTTCGAC GAGCATCCACAGCCTCAAAC
RI05077 J013134N07 AP005572 OJ1506_A04 34075bp 34304bp 229bp Scaffold001938 10073bp 10312bp 239bp -10bp 36cM AATCGCCGCTTATGTCAACT TGTACACACGGACTTTGTTGC
RI05078 J013134N07 AP005572 OJ1506_A04 35562bp 36523bp 961bp Scaffold001938 11570bp 12532bp 962bp -1bp 36cM GCTATGACAAGGGTGCTTCTG TCTTCAAGAACAGCCCACAA
RI05167 001-027-F12 AP005675 OJ1001_G09 37087bp 37364bp 277bp Scaffold007095 14451bp 14727bp 276bp 1bp 36.0-40.1cM TGAACCTCTGCTCTCTCGTTT GTGCACAAATGACTCCCAAA
RI05168 J023148B06 AP005675 OJ1001_G09 52828bp 53594bp 766bp Scaffold002008 9540bp 10304bp 764bp 2bp 36.0-40.1cM TTAGCTTGGCAGGTGGTTCT CCTTCTGGAGGGTAGGGAGA
RI05298 J013000D13 AP005872 B1168F12 19933bp 20849bp 916bp Scaffold005597 4043bp 4943bp 900bp 16bp 40.1cM TGAGGCATCTGATCTTGCTG CACCATGTCACCCTTTTGTG
RI05299 002-120-E09 AP005872 B1168F12 78070bp 78816bp 746bp Scaffold004739 3649bp 4396bp 747bp -1bp 40.1cM GCTGCCTGATGATTCCTCTT GGAGCGAATGAGGCTAGGAC
RI05190 J013000L20 AP005702 P0027G10 139901bp 140183bp 282bp Scaffold006774 13816bp 14097bp 281bp 1bp 41.9cM TACACTTTCGTCGCACCAAC TAACAACATTGCGCCAGAGA
RI05191 J013147J22 AP005702 P0027G10 71774bp 72036bp 262bp Scaffold000116 38195bp 38459bp 264bp -2bp 41.9cM TCGGCGACAAGTACAAGGAT GTTCTCCCTCAGGATGCAAG
RI05192 J013147J22 AP005702 P0027G10 72823bp 73472bp 649bp Scaffold000116 36761bp 37409bp 648bp 1bp 41.9cM CCTGTAAGGGGATCAACACC GTCCATGGAATTGCTTTTGG
RI05193 001-014-F08 AP005702 P0027G10 81329bp 81856bp 527bp Scaffold000116 28374bp 28900bp 526bp 1bp 41.9cM GGTTGGAGCATAGCGACTTC ACCAACAAGCACTCCAAACC
RI04906 J033099J19 AP005312 P0505H05 2074bp 2992bp 918bp Scaffold006774 5216bp 6131bp 915bp 3bp 42.5cM GAAAGGTTGCAGGTGAGAGG AGCAATGGACCAAAGTCACC
RI04735 J013001E08 AP005129 P0698F03 118074bp 118481bp 407bp Scaffold001309 30023bp 30429bp 406bp 1bp 44.1cM GCCGTGTGGGTGAGATTC CATCCTCCATGCTCATCAAA
RI05176 J023027H14 AP005692 OSJNBa0055N01 54586bp 54950bp 364bp Scaffold003424 15119bp 15480bp 361bp 3bp 44.1cM TCGTCTCCAGGAGTATTTCTTCA GGAAAAAGTCCACCAGAGGAT
RI05201 002-111-G01 AP005728 OSJNBa0048A13 57352bp 58005bp 653bp Scaffold004668 424bp 1078bp 654bp -1bp 44.1cM AGCTCACCCTTGCCATATCA TGCAAGAGCTTCTGGCTTTT
RI04912 J023075J15 AP005321 P0650H04 106909bp 107248bp 339bp Scaffold005373 1572bp 1917bp 345bp -6bp 45.2-49.3cM CCACACTTCTCGGCGTTAGA GAACCCTGAACATCGGATTG
RI04913 001-124-D03 AP005321 P0650H04 99264bp 99801bp 537bp Scaffold002037 2659bp 3208bp 549bp -12bp 45.2-49.3cM CAGCGTAAACATGCAGAGGA CAGCTTTGTGTCCAGCTCAC
RI05319 001-040-B11 AP005904 B1040D06 52208bp 52884bp 676bp Scaffold001170 5008bp 5683bp 675bp 1bp 45.2cM CGCAGCTGCAAATAATGAAA AGAGGTCCTTTGCATCGTGT
RI04691 001-013-E07 AP005093 OJ1294_G06 56251bp 56676bp 425bp Scaffold007489 14874bp 15297bp 423bp 2bp 50.7cM ACCTGCACCTACGTCAAAGG ACCTTGTCCCCGTTGTCC
RI04692 J013073D17 AP005093 OJ1294_G06 74125bp 74344bp 219bp Scaffold001429 13504bp 13724bp 220bp -1bp 50.7cM GCCCATTGACTCCAGAAGAA TCCTCCATTAGGGGGAAAAG
RI04693 J013073D17 AP005093 OJ1294_G06 75836bp 76378bp 542bp Scaffold001429 15215bp 15754bp 539bp 3bp 50.7cM GTCGTGCTACTTCCGTCCAT TGGTGACCACAGCTCTCTCTT
RI04930 001-103-E03 AP005397 P0643D11 42747bp 43294bp 547bp Scaffold003989 10510bp 11056bp 546bp 1bp 50.7cM GCTGCTGGATTTCTGCTACC TGCAATGGTGAAATGCACTC
RI04931 J023036B16 AP005397 P0643D11 48755bp 49014bp 259bp Scaffold003989 16530bp 16793bp 263bp -4bp 50.7cM TTGGTTGAGCAATCGGTTTT GTGGTCGGAAGGTATTGGTG
RI04932 J023036B16 AP005397 P0643D11 50595bp 51027bp 432bp Scaffold003989 18377bp 18805bp 428bp 4bp 50.7cM GCTGCTCTATTTGCCTTTGC ACTCCCGAGTTCCAAAATGC
RI04944 J013024N13 AP005426 P0668D04 26185bp 27162bp 977bp Scaffold007254 8858bp 9822bp 964bp 13bp 50.7-55.3cM TGATCTCAGACCTCGCAACA TCCTCCAGGAAAGCCATCTAT
RI04946 001-043-D11 AP005429 P0701F11 68658bp 69177bp 519bp Scaffold004138 3852bp 4278bp 426bp 93bp 50.7-55.3cM GTCACCATGGACCCCAAC GCCTTACCGTAGCAGTACCAG
RI04947 001-043-D11 AP005429 P0701F11 69185bp 69474bp 289bp Scaffold004138 3538bp 3844bp 306bp -17bp 50.7-55.3cM CGACCTCCTCGACTACGACT ATGGACGACGTGAACACCAC
RI04948 001-043-D11 AP005429 P0701F11 69453bp 69726bp 273bp Scaffold004138 3290bp 3559bp 269bp 4bp 50.7-55.3cM GTCAAGCTGCTGCTGGAGAG GGAGTCGTAGTCGAGGAGGTC
RI05133 J013037F14 AP005636 P0707C02 122962bp 123402bp 440bp Scaffold000408 29031bp 29463bp 432bp 8bp 50.7-55.3cM TCTCCTCCACCATCATCTCC ACGAACAGGCAGATCACCAC
RI05134 006-212-G01 AP005636 P0707C02 155821bp 156882bp 1061bp Scaffold009899 6944bp 7907bp 963bp 98bp 50.7-55.3cM CCCCACGACCGCTAAGAC CCAATTTACGGTATGCAATCA
RI05135 J033089J21 AP005636 P0707C02 98284bp 98935bp 651bp Scaffold000408 53604bp 54257bp 653bp -2bp 50.7-55.3cM AATCCTCACGCACACACCTC GCACATGCCAATCACTATGC
RI05239 006-211-F11 AP005784 P0014G10 45730bp 45960bp 230bp Scaffold010750 3369bp 3583bp 214bp 16bp 50.7-55.3cM GAGGCACGAGCTGCTTGA CTCGCTCATCTGAGTGACCTT
RI05087 001-025-E02 AP005579 OJ1740_D06 3326bp 4264bp 938bp Scaffold005118 13287bp 14227bp 940bp -2bp 55.3cM ATTTACGGAAACGTGATTCG TTCTTCCTTTTCTGCAATGGT
RI05088 J023081B08 AP005579 OJ1740_D06 72972bp 73177bp 205bp Scaffold002286 12915bp 13122bp 207bp -2bp 55.3cM GCTTCCAGCACCACAAGAA ATGGCCTTGCTGTTGTTGAT
RI05089 J023081B08 AP005579 OJ1740_D06 73545bp 73784bp 239bp Scaffold002286 13459bp 13699bp 240bp -1bp 55.3cM AGATGGTGACCTGCGACTG GAACCGCTTCTCGAAGTTCA
RI05090 J023081B08 AP005579 OJ1740_D06 73869bp 74099bp 230bp Scaffold002286 13784bp 14016bp 232bp -2bp 55.3cM GAGGCCATCCATGTCATCAG CTTCGGCATGCAGTACACC
RI05091 J023081B08 AP005579 OJ1740_D06 74267bp 74543bp 276bp Scaffold002286 14184bp 14455bp 271bp 5bp 55.3cM CACCACCATCTACCCCTTCA CTCCACCTCATCTCCAGGAT
RI05092 J023113H15 AP005579 OJ1740_D06 77819bp 78672bp 853bp Scaffold002286 17199bp 18049bp 850bp 3bp 55.3cM GAACTTGCGGGATGTTGTTA CGCAATGTGCTTGCTTTTAG
RI05339 001-034-H01 AP006170 OSJNBa0042B15 125427bp 125790bp 363bp Scaffold005298 13499bp 13826bp 327bp 36bp 92.1cM GACAGAGAAACTGGGCGTTC CTGTTAAACCCCCACAAAGC
RI04736 001-021-H09 AP005152 P0439F12 144904bp 145787bp 883bp Scaffold006610 1674bp 2553bp 879bp 4bp Unknown GGATCAACCAGTGAGCATGA GCAGCACTTGTTGCAGAAGA
RI04945 001-131-A05 AP005427 P0684H11 54464bp 55302bp 838bp Scaffold000671 34951bp 35788bp 837bp 1bp Unknown CAATGGGTTCCAAACCTCAG TTTCTTCAGTGCCATTCCAA
RI05132 001-035-B07 AP005635 P0646C08 138982bp 139672bp 690bp Scaffold008500 5055bp 5735bp 680bp 10bp Unknown CCTTACCGTGCACCTGAACT TTCAGCGTGCAGTTGACAAT
RI05194 J023128J02 AP005706 P0456E09 74771bp 75672bp 901bp Scaffold000409 924bp 1765bp 841bp 60bp Unknown GAGAAGAGAAGACGCGCAAG CACAATTTGGAGCCTGAACA
RI05195 001-124-B07 AP005710 P0646B07 60581bp 60994bp 413bp Scaffold004514 22980bp 23394bp 414bp -1bp Unknown CCAAAGAGCTGATGGGTTGT AAATGCCAAGCTCTCCAGAA